Abstract: The paper attempts to elucidate the columnar structure
of the cortex by answering the following questions. (1) Why the
cortical neurons with similar interests tend to be vertically arrayed
forming what is known as cortical columns? (2) How to describe the
cortex as a whole in concise mathematical terms? (3) How to design
efficient digital models of the cortex?
Abstract: The scientific achievements coming from molecular
biology depend greatly on the capability of computational
applications to analyze the laboratorial results. A comprehensive
analysis of an experiment requires typically the simultaneous study
of the obtained dataset with data that is available in several distinct
public databases. Nevertheless, developing a centralized access to
these distributed databases rises up a set of challenges such as: what
is the best integration strategy, how to solve nomenclature clashes,
how to solve database overlapping data and how to deal with huge
datasets. In this paper we present GeNS, a system that uses a simple and yet innovative approach to address several biological data integration issues. Compared with existing systems, the main
advantages of GeNS are related to its maintenance simplicity and to its coverage and scalability, in terms of number of supported
databases and data types. To support our claims we present the current use of GeNS in two concrete applications. GeNS currently contains more than 140 million of biological relations and it can be
publicly downloaded or remotely access through SOAP web services.
Abstract: The biological activity of A. pullulans isolates against
species of the genus Fusarium, bacteria of the genus Azotobacter and
pseudomonads colonizing wheat kernels was evaluated. A field
experiment was carried out in 2009-2011, in north-eastern Poland.
Winter wheat (cv. Bogatka) plants were sprayed with a cell
suspension of A. pullulans at a density of 106 - 108 per cm3 water at
the stem elongation stage and the heading stage. Untreated plants
served as control. The abundance of epiphytic yeasts, bacteria of the
genus Azotobacter, pseudomonads and Fusarium pathogens on wheat
grain was estimated at harvest and after six months’ storage. The
average size of yeast communities was significantly greater on wheat
kernels treated with a cell suspension of A. pullulans, compared with
control samples. In 2010-2011, biological control reduced the
abundance of some species of the genus Fusarium.
Abstract: Water is the main component of biological processes.
Water management is important to obtain higher productivity. In this
study, some of the yield components were investigated together with
different drought levels. Four chickpea genotypes (CDC Frontier,
CDC Luna, Sawyer and Sierra) were grown in pots with 3 different
irrigation levels (a dose of 17.5 ml, 35 ml and 70 ml for each pot per
day) after three weeks from sowing. In the research, flowering, pod
set, pod per plant, fertile pod, double seed/pod, stem diameter, plant
weight, seed per plant, 1000 seed weight, seed diameter, vegetation
length and weekly plant height were measured. Consequently,
significant differences were observed on all the investigated
characteristics owing to genotypes (except double seed/pod and stem
diameter), water levels (except first pod, seed weight and height on
3rd week) and genotype x water level interaction (except first pod,
double seed/pod, seed weight and height).
Abstract: A new and novel approach in medicine is the use of
cold plasma for various applications such as sterilization blood
coagulation and cancer cell treatment. In this paper a pin-to-hole
plasma jet suitable for biological applications is investigated and
characterized and the possibility and feasibility of cancer cell
treatment is evaluated. The characterization includes power
consumption via Lissajous method, thermal behavior of plasma using
Infra-red camera as a novel method, Optical Emission Spectroscopy
(OES) to determine the species that are generated. Treatment of
leukemia cancer cells is also implemented and MTT assay is used to
evaluate viability.
Abstract: The Beshar River is one aquatic ecosystem,which is
affected by pollutants. This study was conducted to evaluate the
effects of human activities on the water quality of the Beshar river.
This river is approximately 190 km in length and situated at the
geographical positions of 51° 20' to 51° 48' E and 30° 18' to 30° 52'
N it is one of the most important aquatic ecosystems of Kohkiloye
and Boyerahmad province next to the city of Yasuj in southern Iran.
The Beshar river has been contaminated by industrial, agricultural
and other activities in this region such as factories, hospitals,
agricultural farms, urban surface runoff and effluent of wastewater
treatment plants. In order to evaluate the effects of these pollutants
on the quality of the Beshar river, five monitoring stations were
selected along its course. The first station is located upstream of
Yasuj near the Dehnow village; stations 2 to 4 are located east, south
and west of city; and the 5th station is located downstream of Yasuj.
Several water quality parameters were sampled. These include pH,
dissolved oxygen, biological oxygen demand (BOD), temperature,
conductivity, turbidity, total dissolved solids and discharge or flow
measurements. Water samples from the five stations were collected
and analysed to determine the following physicochemical
parameters: EC, pH, T.D.S, T.H, No2, DO, BOD5, COD during 2008
to 2009. The study shows that the BOD5 value of station 1 is at a
minimum (1.5 ppm) and increases downstream from stations 2 to 4 to
a maximum (7.2 ppm), and then decreases at station 5. The DO
values of station 1 is a maximum (9.55 ppm), decreases downstream
to stations 2 - 4 which are at a minimum (3.4 ppm), before increasing
at station 5. The amount of BOD and TDS are highest at the 4th
station and the amount of DO is lowest at this station, marking the
4th station as more highly polluted than the other stations. The
physicochemical parameters improve at the 5th station due to
pollutant degradation and dilution. Finally the point and nonpoint
pollutant sources of Beshar river were determined and compared to
the monitoring results.
Abstract: This study developed a high efficient and combined
biological and chemical filter treatment process. This process used
PAC (Powder Activated Carbon), Alum and attached growth
treatment process. The system removals of total nitrogen and total
phosphorus ratio of two were as high as 70% and 73%, moreover, the
effluent water was suitable to urban and agricultural water. Also the
advantages of this process are not only occupies small place but is
simple, economic and easy operating. Besides, our developed process
can keep stable process efficiency even in relative low load level.
Therefore, this study judges that use of the high efficient and
combined biological and chemical filter treatment process, it is
expected that the effluent water in this system can be reused as urban
and agricultural water.
Abstract: Sports Sciences has been historically supported by the positivism idea of science, especially by the mechanistic/reductionist and becomes a field that views experimentation and measurement as the mayor research domains. The disposition to simplify nature and the world by parts has fragmented and reduced the idea of bodyathletes as machine. In this paper we intent to re-think this perception lined by Complexity Theory. We come with the idea of athletes as a reflexive and active being (corporeity-body). Therefore, the construction of a training that considers the cultural, biological, psychological elements regarding the experience of the human corporal movements in a circumspect and responsible way could bring better chances of accomplishment. In the end, we hope to help coaches understand the intrinsic complexity of the body they are training, how better deal with it, and, in the field of a deep globalization among the different types of knowledge, to respect and accepted the peculiarities of knowledge that comprise this area.
Abstract: Ligula intestinalis is a three-host life-cycle
Pseudophyllidean Cestode which in its plerocercoid stage infests a
range of fresh water species. The objective of the present study was
the worm occurrence within planctonic copepods, fishes and
piscivorous birds and examine of parasite-hosts samples in the Lake
of Sattarkhan Dam (near the city of Ahar, East Azerbaijan, Iran).
Fish sample were collected with fyke and gill nets and the abdominal
cavity was examined for the presence of ligula. Zooplanktons were
captured using a planktonic net and occurrence of parasitic larval
form in the body cavity was determined. Piscivorous birds were
selected by telescope, they hunted and dissected for presence of
parasite eggs in their gut. Results indicated that prevalence of
infection was 16% for cyclopid copepoda and majority of infected
cyclopid were female Cyclops. Investigation of 310 fishes specimens
were indicated to infection of five species of cyprinid fishes. In
addition, results indicated to manipulation of six species of migratory
aquatic and semi aquatic birds by ligula. Obtained results are in
agreement by previous studies. Its definite in this study that all of
fishes in Sattarkhan Lake capable to infection, its important for
health because they capture by native people and it is documented
that ligula can be introduce as a zoonose. It's seemed that to prevent
from disperses of parasite and restricted of infection, biological
elimination can be effective and it's necessary to inform native
people about sanitation.
Abstract: Intermittent aeration process can be easily applied on
the existing activated sludge system and is highly reliable against the loading changes. It can be operated in a relatively simple way as well.
Since the moving-bed biofilm reactor method processes pollutants by attaching and securing the microorganisms on the media, the process
efficiency can be higher compared to the suspended growth biological
treatment process, and can reduce the return of sludge. In this study,
the existing intermittent aeration process with alternating flow being
applied on the oxidation ditch is applied on the continuous flow stirred tank reactor with advantages from both processes, and we would like
to develop the process to significantly reduce the return of sludge in the clarifier and to secure the reliable quality of treated water by
adding the moving media. Corresponding process has the appropriate
form as an infrastructure based on u- environment in future u- City and
is expected to accelerate the implementation of u-Eco city in conjunction with city based services. The system being conducted in a
laboratory scale has been operated in HRT 8hours except for the final
clarifier and showed the removal efficiency of 97.7 %, 73.1 % and 9.4
% in organic matters, TN and TP, respectively with operating range of
4hour cycle on system SRT 10days. After adding the media, the removal efficiency of phosphorus showed a similar level compared to
that before the addition, but the removal efficiency of nitrogen was
improved by 7~10 %. In addition, the solids which were maintained in
MLSS 1200~1400 at 25 % of media packing were attached all onto the
media, which produced no sludge entering the clarifier. Therefore, the
return of sludge is not needed any longer.
Abstract: The study of human hand morphology reveals that developing an artificial hand with the capabilities of human hand is an extremely challenging task. This paper presents the development of a robotic prosthetic hand focusing on the improvement of a tendon driven mechanism towards a biomimetic prosthetic hand. The design of this prosthesis hand is geared towards achieving high level of dexterity and anthropomorphism by means of a new hybrid mechanism that integrates a miniature motor driven actuation mechanism, a Shape Memory Alloy actuated mechanism and a passive mechanical linkage. The synergy of these actuators enables the flexion-extension movement at each of the finger joints within a limited size, shape and weight constraints. Tactile sensors are integrated on the finger tips and the finger phalanges area. This prosthesis hand is developed with an exact size ratio that mimics a biological hand. Its behavior resembles the human counterpart in terms of working envelope, speed and torque, and thus resembles both the key physical features and the grasping functionality of an adult hand.
Abstract: Bio-chips are used for experiments on genes and
contain various information such as genes, samples and so on. The
two-dimensional bio-chips, in which one axis represent genes and the
other represent samples, are widely being used these days. Instead of
experimenting with real genes which cost lots of money and much
time to get the results, bio-chips are being used for biological
experiments. And extracting data from the bio-chips with high
accuracy and finding out the patterns or useful information from such
data is very important. Bio-chip analysis systems extract data from
various kinds of bio-chips and mine the data in order to get useful
information. One of the commonly used methods to mine the data is
classification. The algorithm that is used to classify the data can be
various depending on the data types or number characteristics and so
on. Considering that bio-chip data is extremely large, an algorithm that
imitates the ecosystem such as the ant algorithm is suitable to use as an
algorithm for classification. This paper focuses on finding the
classification rules from the bio-chip data using the Ant Colony
algorithm which imitates the ecosystem. The developed system takes
in consideration the accuracy of the discovered rules when it applies it
to the bio-chip data in order to predict the classes.
Abstract: Endemic Artemia franciscana populations can be found throughout the American continent and also as an introduced specie in several country all over the world, such as in the Mediterranean region where Artemia franciscana was identified as an invasive specie replacing native Artemia parthenogenetica and Artemia salina. In the present study, the characterization of the new invasive Artemia franciscana reported from Sabkhet Halk El-Menzel (Tunisia) was done based on the cysts biometry, nauplii instar-I length, Adult sexual dimorphism and fatty acid profile. The mean value of the diameter of non-decapsulated and decapsulated cysts, chorion thickness and naupliar length is 235.8, 226.3, 4.75 and 426.8 μm, respectively. Sexual dimorphism for adults specimen showed that maximal distance between compound eyes, diameter for compound eyes, length of first antenna and the abdomen length compared to the total body length ratio, are the most important variables for males and females discrimination with a total contribution of 62.39 %. The analysis of fatty acid methyl esters profile of decapsulated cysts resulted in low levels of linolenic acid (LLA, C18:3n-3) and high levels of eicosapentaenoic acid (EPA, C20:5n-3) with 3.11 and 11.10 %, respectively. Low quantity of docosahexaenoic acid (DHA, 22:6n-3) was also observed with 0.17 mg.g-1 dry weight.
Abstract: A Positron Emission Tomography (PET) is a radioisotope imaging technique that illustrates the organs and the metabolisms of the human body. This technique is based on the simultaneous detection of 511 keV annihilation photons, annihilated as a result of electrons annihilating positrons that radiate from positron-emitting radioisotopes that enter biological active molecules in the body. This study was conducted on ten patients in an effort to conduct patient-related experimental studies. Dosage monitoring for the bladder, which was the organ that received the highest dose during PET applications, was conducted for 24 hours. Assessment based on measuring urination activities after injecting patients was also a part of this study. The MIRD method was used to conduct dosage calculations for results obtained from experimental studies. Results obtained experimentally and theoretically were assessed comparatively.
Abstract: It has been established that microRNAs (miRNAs) play
an important role in gene expression by post-transcriptional regulation
of messengerRNAs (mRNAs). However, the precise relationships
between microRNAs and their target genes in sense of numbers,
types and biological relevance remain largely unclear. Dissecting the
miRNA-target relationships will render more insights for miRNA
targets identification and validation therefore promote the understanding
of miRNA function. In miRBase, miRanda is the key
algorithm used for target prediction for Zebrafish. This algorithm
is high-throughput but brings lots of false positives (noise). Since
validation of a large scale of targets through laboratory experiments
is very time consuming, several computational methods for miRNA
targets validation should be developed. In this paper, we present an
integrative method to investigate several aspects of the relationships
between miRNAs and their targets with the final purpose of extracting
high confident targets from miRanda predicted targets pool. This is
achieved by using the techniques ranging from statistical tests to
clustering and association rules. Our research focuses on Zebrafish.
It was found that validated targets do not necessarily associate with
the highest sequence matching. Besides, for some miRNA families,
the frequency of their predicted targets is significantly higher in the
genomic region nearby their own physical location. Finally, in a case
study of dre-miR-10 and dre-miR-196, it was found that the predicted
target genes hoxd13a, hoxd11a, hoxd10a and hoxc4a of dre-miR-
10 while hoxa9a, hoxc8a and hoxa13a of dre-miR-196 have similar
characteristics as validated target genes and therefore represent high
confidence target candidates.
Abstract: Information theory and Statistics play an important role in Biological Sciences when we use information measures for the study of diversity and equitability. In this communication, we develop the link among the three disciplines and prove that sampling distributions can be used to develop new information measures. Our study will be an interdisciplinary and will find its applications in Biological systems.
Abstract: The efficient operation of any biological treatment
process requires pre-treatment of incompatible pollutants such as
acids, bases, oil, toxic substances, etc. which hamper the treatment
of other major components which are otherwise degradable. The
pre-treatment of alkaline waste-waters, generated from various
industries like textile, paper & pulp, potato-processing industries,
etc., having a pH of 10 or higher, is essential. The pre-treatment,
i.e., neutralization of such alkaline waste-waters can be achieved by
chemical as well as biological means. However, the biological pretreatment
offers better package over the chemical means by being
safe and economical. The biological pre-treatment can be
accomplished by using a blend of microorganisms able to withstand
such harsh alkaline conditions. In the present study, for the proper
pre-treatment of alkaline waste-waters, a package of alkalophilic
bacteria is formulated to neutralise the alkaline pH of the industrial
waste-waters. The developed microbial package is cost-effective as
well as environmental friendly.
Abstract: Erwinia carotovora var. carotovora is the main cause of soft rot in potatoes. Hyphaene thebaica was studied for biocontrol of E. carotovora which inhibited growth of E. carotovora on solid medium, a comparative study of classical and ultrasound-assisted extractions of Hyphaene thebaica fruit. The use of ultrasound decreased significant the total time of treatment and increase the total amount of crude extract. The crude extract was subjected to determine the in vitro, by a bioassay technique revealed that the treatment of paper disks with ultrasound extraction of Hyphaene thebaica reduced the growth of pathogen and produced inhibition zones up to 38mm in diameter. The antioxidant activity of ultrasound-ethanolic extract of Doum fruits (Hyphaene thebaica) was determined. Data obtained showed that the extract contains the secondary metabolites such as Tannins, Saponin, Flavonoids, Phenols, Steroids, Terpenoids, Glycosides and Alkaloids.
Abstract: This study is aimed to investigate feasibility of the
aerobic biological process to treat oily wastewater from palm oil food
industry. Effect of aeration and sludge concentrations are studied.
Raw sludge and raw wastewater was mixed and acclimatized for five
days in a stirred tank reactor. The aeration rate (no aeration, low;
1.5L/min and high rate; 2L/min) and sludge concentration (3675,
7350, and 11025mg/L of VSS) were varied. Responses of process
were pH, COD, oil and grease, VSS, and PHB content. It was found
that the treatment can remove 85.1 to 97.1 % of COD and remove
12.9 to 54.8% of oil & grease. The PHB yield was found to be within
0.15% to 2.4% as PHB/VSS ratio and 0.01% to 0.12% as PHB/COD
removed. The higher aeration results a high COD removal and oil &
grease removal, while experiment without aeration gives better PHB
yield. Higher sludge concentrations (11025mg/L VSS) give higher
removal of oil & grease while moderate sludge concentration
(7350mg/L VSS) give better result in COD removal. Higher PHB
yield is obtained in low sludge concentration (3675mg/L).
Abstract: Lignocellulosic materials are considered the most
abundant renewable resource available for the Bioethanol
Production. Water Hyacinth is one of potential raw material of the
world-s worst aquatic plant as a feedstock to produce Bioethanol.
The purposed this research is obtain reduced of matter for
biodegradation lignin in Biological pretreatment with White Rot
Fungi eg. Phanerochaete Chrysosporium using Solid state
Fermentation methods. Phanerochaete Chrysosporium is known to
have the best ability to degraded lignin, but simultaneously it can also
degraded cellulose and hemicelulose. During 8 weeks incubation,
water hyacinth occurred loss of weight reached 34,67%, while loss
of lignin reached 67,21%, loss of cellulose reached 11,01% and loss
of hemicellulose reached 36,56%. The kinetic of losses lignin using
regression linear plot, the results is obtained constant rate (k) of
reduction lignin is -0.1053 and the equation of reduction of lignin
is y = wo - 0, 1.53 x