Abstract: This study describes a micro device integrated with
multi-chamber for polymerase chain reaction (PCR) with different
annealing temperatures. The device consists of the reaction
polydimethylsiloxane (PDMS) chip, a cover glass chip, and is
equipped with cartridge heaters, fans, and thermocouples for
temperature control. In this prototype, commercial software is utilized
to determine the geometric and operational parameters those are
responsible for creating the denaturation, annealing, and extension
temperatures within the chip. Two cartridge heaters are placed at two
sides of the chip and maintained at two different temperatures to
achieve a thermal gradient on the chip during the annealing step. The
temperatures on the chip surface are measured via an infrared imager.
Some thermocouples inserted into the reaction chambers are used to
obtain the transient temperature profiles of the reaction chambers
during several thermal cycles. The experimental temperatures
compared to the simulated results show a similar trend. This work
should be interesting to persons involved in the high-temperature
based reactions and genomics or cell analysis.
Abstract: For several high speed networks, providing resilience against failures is an essential requirement. The main feature for designing next generation optical networks is protecting and restoring high capacity WDM networks from the failures. Quick detection, identification and restoration make networks more strong and consistent even though the failures cannot be avoided. Hence, it is necessary to develop fast, efficient and dependable fault localization or detection mechanisms. In this paper we propose a new fault localization algorithm for WDM networks which can identify the location of a failure on a failed lightpath. Our algorithm detects the failed connection and then attempts to reroute data stream through an alternate path. In addition to this, we develop an algorithm to analyze the information of the alarms generated by the components of an optical network, in the presence of a fault. It uses the alarm correlation in order to reduce the list of suspected components shown to the network operators. By our simulation results, we show that our proposed algorithms achieve less blocking probability and delay while getting higher throughput.
Abstract: The asymmetric trafc between uplink and downlink
over recent mobile communication systems has been conspicuous because
of providing new communication services. This paper proposes
an asymmetric trafc accommodation scheme adopting a multihop
cooperative transmission technique for CDMA/FDD cellular networks.
The proposed scheme employs the cooperative transmission
technique in the already proposed downlink multihop transmissions
for the accommodation of the asymmetric trafc, which utilizes
the vacant uplink band for the downlink relay transmissions. The
proposed scheme reduces the transmission power at the downlink
relay transmissions and then suppresses the interference to the uplink
communications, and thus, improves the uplink performance. The
proposed scheme is evaluated by computer simulation and the results
show that it can achieve better throughput performance.
Abstract: An Ad hoc wireless network comprises of mobile
terminals linked and communicating with each other sans the aid of
traditional infrastructure. Optimized Link State Protocol (OLSR) is a
proactive routing protocol, in which routes are discovered/updated
continuously so that they are available when needed. Hello messages
generated by a node seeks information about its neighbor and if the
latter fails to respond to a specified number of hello messages
regulated by neighborhood hold time, the node is forced to assume
that the neighbor is not in range. This paper proposes to evaluate
OLSR routing protocol in a random mobility network having various
neighborhood hold time intervals. The throughput and delivery ratio
are also evaluated to learn about its efficiency for multimedia loads.
Abstract: Next Generation Wireless Network (NGWN) is
expected to be a heterogeneous network which integrates all different
Radio Access Technologies (RATs) through a common platform. A
major challenge is how to allocate users to the most suitable RAT for
them. An optimized solution can lead to maximize the efficient use
of radio resources, achieve better performance for service providers
and provide Quality of Service (QoS) with low costs to users.
Currently, Radio Resource Management (RRM) is implemented
efficiently for the RAT that it was developed. However, it is not
suitable for a heterogeneous network. Common RRM (CRRM) was
proposed to manage radio resource utilization in the heterogeneous
network. This paper presents a user level Markov model for a three
co-located RAT networks. The load-balancing based and service
based CRRM algorithms have been studied using the presented
Markov model. A comparison for the performance of load-balancing
based and service based CRRM algorithms is studied in terms of
traffic distribution, new call blocking probability, vertical handover
(VHO) call dropping probability and throughput.
Abstract: In this paper, multi-processors job shop scheduling problems are solved by a heuristic algorithm based on the hybrid of priority dispatching rules according to an ant colony optimization algorithm. The objective function is to minimize the makespan, i.e. total completion time, in which a simultanous presence of various kinds of ferons is allowed. By using the suitable hybrid of priority dispatching rules, the process of finding the best solution will be improved. Ant colony optimization algorithm, not only promote the ability of this proposed algorithm, but also decreases the total working time because of decreasing in setup times and modifying the working production line. Thus, the similar work has the same production lines. Other advantage of this algorithm is that the similar machines (not the same) can be considered. So, these machines are able to process a job with different processing and setup times. According to this capability and from this algorithm evaluation point of view, a number of test problems are solved and the associated results are analyzed. The results show a significant decrease in throughput time. It also shows that, this algorithm is able to recognize the bottleneck machine and to schedule jobs in an efficient way.
Abstract: The world of wireless telecommunications is rapidly evolving. Technologies under research and development promise to deliver more services to more users in less time. This paper presents the emerging technologies helping wireless systems grow from where we are today into our visions of the future. This paper will cover the applications and characteristics of emerging wireless technologies: Wireless Local Area Networks (WiFi-802.11n), Wireless Personal Area Networks (ZigBee) and Wireless Metropolitan Area Networks (WiMAX). The purpose of this paper is to explain the impending 802.11n standard and how it will enable WLANs to support emerging media-rich applications. The paper will also detail how 802.11n compares with existing WLAN standards and offer strategies for users considering higher-bandwidth alternatives. The emerging IEEE 802.15.4 (ZigBee) standard aims to provide low data rate wireless communications with high-precision ranging and localization, by employing UWB technologies for a low-power and low cost solution. WiMAX (Worldwide Interoperability for Microwave Access) is a standard for wireless data transmission covering a range similar to cellular phone towers. With high performance in both distance and throughput, WiMAX technology could be a boon to current Internet providers seeking to become the leader of next generation wireless Internet access. This paper also explores how these emerging technologies differ from one another.
Abstract: The increase on the demand of IT resources diverts
the enterprises to use the cloud as a cheap and scalable solution.
Cloud computing promises achieved by using the virtual machine as a
basic unite of computation. However, the virtual machine pre-defined
settings might be not enough to handle jobs QoS requirements. This
paper addresses the problem of mapping jobs have critical start
deadlines to virtual machines that have predefined specifications.
These virtual machines hosted by physical machines and shared a
fixed amount of bandwidth. This paper proposed an algorithm that
uses the idle virtual machines bandwidth to increase the quote of other
virtual machines nominated as executors to urgent jobs. An algorithm
with empirical study have been given to evaluate the impact of the
proposed model on impatient jobs. The results show the importance
of dynamic bandwidth allocation in virtualized environment and its
affect on throughput metric.
Abstract: In this paper, we are going to determine the threshold levels of adaptive modulation in a burst by burst CDMA system by a suboptimum method so that the above method attempts to increase the average bit per symbol (BPS) rate of transceiver system by switching between the different modulation modes in variable channel condition. In this method, we choose the minimum values of average bit error rate (BER) and maximum values of average BPS on different values of average channel signal to noise ratio (SNR) and then calculate the relative threshold levels of them, so that when the instantaneous SNR increases, a higher order modulation be employed for increasing throughput and vise-versa when the instantaneous SNR decreases, a lower order modulation be employed for improvement of BER. In transmission step, by this adaptive modulation method, in according to comparison between obtained estimation of pilot symbols and a set of above suboptimum threshold levels, above system chooses one of states no transmission, BPSK, 4QAM and square 16QAM for modulation of data. The expected channel in this paper is a slow Rayleigh fading.
Abstract: WiMAX and Wi-Fi are considered as the promising
broadband access solutions for wireless MAN’s and LANs,
respectively. In the recent works WiMAX is considered suitable as a
backhaul service to connect multiple dispersed Wi-Fi ‘hotspots’.
Hence a new integrated WiMAX/Wi-Fi architecture has been
proposed in literatures. In this paper the performance of an integrated
WiMAX/Wi-Fi network has been investigated by streaming a video
conference application. The difference in performance between the
two protocols is compared with respect to video conferencing. The
Heterogeneous network was simulated in the OPNET simulator.
Abstract: Powerline Communications –PLC– as an alternative
method for broadband networking, has the advantage of transmitting
over channels already used for electrical distribution or even
transmission. But these channels have been not designed with usual
wired channels requirements for broadband applications such as
stable impedance or known attenuation, and the network have to
reject noises caused by electrical appliances that share the same
channel. Noise control standards are difficult to complain or simply
do not exist on Latin-American environments. This paper analyzes
PLC throughput for home connectivity by probing noisy channel
scenarios in a PLC network and the statistical results are shown.
Abstract: This paper describes the application of a model predictive controller to the problem of batch reactor temperature control. Although a great deal of work has been done to improve reactor throughput using batch sequence control, the control of the actual reactor temperature remains a difficult problem for many operators of these processes. Temperature control is important as many chemical reactions are sensitive to temperature for formation of desired products. This controller consist of two part (1) a nonlinear control method GLC (Global Linearizing Control) to create a linear model of system and (2) a Model predictive controller used to obtain optimal input control sequence. The temperature of reactor is tuned to track a predetermined temperature trajectory that applied to the batch reactor. To do so two input signals, electrical powers and the flow of coolant in the coil are used. Simulation results show that the proposed controller has a remarkable performance for tracking reference trajectory while at the same time it is robust against noise imposed to system output.
Abstract: The Internet telephony employs a new type of Internet communication on which a mutual communication is realized by establishing sessions. Session Initiation Protocol (SIP) is used to establish sessions between end-users. For unreliable transmission (UDP), SIP message should be retransmitted when it is lost. The retransmissions increase a load of the SIP signaling network, and sometimes lead to performance degradation when a network is overloaded. The paper proposes an overload control for a SIP signaling network to protect from a performance degradation. Introducing two thresholds in a queue of a SIP proxy server, the SIP proxy server detects a congestion. Once congestion is detected, a SIP signaling network restricts to make new calls. The proposed overload control is evaluated using the network simulator (ns-2). With simulation results, the paper shows the proposed overload control works well.
Abstract: Yeast cells live in a constantly changing environment that requires the continuous adaptation of their genomic program in order to sustain their homeostasis, survive and proliferate. Due to the advancement of high throughput technologies, there is currently a large amount of data such as gene expression, gene deletion and protein-protein interactions for S. Cerevisiae under various environmental conditions. Mining these datasets requires efficient computational methods capable of integrating different types of data, identifying inter-relations between different components and inferring functional groups or 'modules' that shape intracellular processes. This study uses computational methods to delineate some of the mechanisms used by yeast cells to respond to environmental changes. The GRAM algorithm is first used to integrate gene expression data and ChIP-chip data in order to find modules of coexpressed and co-regulated genes as well as the transcription factors (TFs) that regulate these modules. Since transcription factors are themselves transcriptionally regulated, a three-layer regulatory cascade consisting of the TF-regulators, the TFs and the regulated modules is subsequently considered. This three-layer cascade is then modeled quantitatively using artificial neural networks (ANNs) where the input layer corresponds to the expression of the up-stream transcription factors (TF-regulators) and the output layer corresponds to the expression of genes within each module. This work shows that (a) the expression of at least 33 genes over time and for different stress conditions is well predicted by the expression of the top layer transcription factors, including cases in which the effect of up-stream regulators is shifted in time and (b) identifies at least 6 novel regulatory interactions that were not previously associated with stress-induced changes in gene expression. These findings suggest that the combination of gene expression and protein-DNA interaction data with artificial neural networks can successfully model biological pathways and capture quantitative dependencies between distant regulators and downstream genes.
Abstract: Expression data analysis is based mostly on the
statistical approaches that are indispensable for the study of
biological systems. Large amounts of multidimensional data resulting
from the high-throughput technologies are not completely served by
biostatistical techniques and are usually complemented with visual,
knowledge discovery and other computational tools. In many cases,
in biological systems we only speculate on the processes that are
causing the changes, and it is the visual explorative analysis of data
during which a hypothesis is formed. We would like to show the
usability of multidimensional visualization tools and promote their
use in life sciences. We survey and show some of the
multidimensional visualization tools in the process of data
exploration, such as parallel coordinates and radviz and we extend
them by combining them with the self-organizing map algorithm. We
use a time course data set of transitional cell carcinoma of the bladder
in our examples. Analysis of data with these tools has the potential to
uncover additional relationships and non-trivial structures.
Abstract: Wireless Mesh Networking is a promising proposal
for broadband data transmission in a large area with low cost and
acceptable QoS. These features- trade offs in WMNs is a hot research
field nowadays. In this paper a mathematical optimization framework
has been developed to maximize throughput according to upper
bound delay constraints. IEEE 802.11 based infrastructure
backhauling mode of WMNs has been considered to formulate the
MINLP optimization problem. Proposed method gives the full
routing and scheduling procedure in WMN in order to obtain
mentioned goals.
Abstract: A concept of switched beam antennas consisting of
2×2 rectangular array spaced by λ/4 accompanied with a null locating
has been proposed in the previous work. In this letter, the
performance evaluations of its prototype are presented. The benefits
of using proposed system have been clearly measured in term of
signal quality, throughput and delays. Also, the impact of position
shift which mesh router is not located on the expected beam direction
has also been investigated.
Abstract: In this paper, a framework is presented trying to make
the most secure web system out of the available generic and web
security technology which can be used as a guideline for
organizations building their web sites. The framework is designed to
provide necessary security services, to address the known security
threats, and to provide some cover to other security problems
especially unknown threats. The requirements for the design are
discussed which guided us to the design of secure web system. The
designed security framework is then simulated and various quality of
service (QoS) metrics are calculated to measure the performance of
this system.
Abstract: This paper is aimed at describing a delay-based endto-
end (e2e) congestion control algorithm, called Very FAST TCP
(VFAST), which is an enhanced version of FAST TCP. The main
idea behind this enhancement is to smoothly estimate the Round-Trip
Time (RTT) based on a nonlinear filter, which eliminates throughput
and queue oscillation when RTT fluctuates. In this context, an evaluation
of the suggested scheme through simulation is introduced, by
comparing our VFAST prototype with FAST in terms of throughput,
queue behavior, fairness, stability, RTT and adaptivity to changes in
network. The achieved simulation results indicate that the suggested
protocol offer better performance than FAST TCP in terms of RTT
estimation and throughput.
Abstract: A mobile Ad-hoc network consists of wireless nodes
communicating without the need for a centralized administration. A
user can move anytime in an ad hoc scenario and, as a result, such a
network needs to have routing protocols which can adopt
dynamically changing topology. To accomplish this, a number of ad
hoc routing protocols have been proposed and implemented, which
include DSR, OLSR and AODV. This paper presents a study on the
QoS parameters for MANET application traffics in large-scale
scenarios with 50 and 120 nodes. The application traffics analyzed in
this study is File Transfer Protocol (FTP). In large scale networks
(120 nodes) OLSR shows better performance and in smaller scale
networks (50 nodes)AODV shows less packet drop rate and OLSR
shows better throughput.