Abstract: A vast array of biological materials, especially algae have received increasing attention for heavy metal removal. Algae have been proven to be cheaper, more effective for the removal of metallic elements in aqueous solutions. A fresh water algal strain was isolated from Zoo Lake, Johannesburg, South Africa and identified as Desmodesmus sp. This paper investigates the efficacy of Desmodesmus sp.in removing heavy metals contaminating the Wonderfonteinspruit Catchment Area (WCA) water bodies. The biosorption data fitted the pseudo-second order and Langmuir isotherm models. The Langmuir maximum uptakes gave the sequence: Mn2+>Ni2+>Fe2+. The best results for kinetic study was obtained in concentration 120 ppm for Fe3+ and Mn2+, whilst for Ni2+ was at 20 ppm, which is about the same concentrations found in contaminated water in the WCA (Fe3+115 ppm, Mn2+ 121 ppm and Ni2+ 26.5 ppm).
Abstract: Wireless sensor networks are consisted of hundreds or
thousands of small sensors that have limited resources.
Energy-efficient techniques are the main issue of wireless sensor
networks. This paper proposes an energy efficient agent-based
framework in wireless sensor networks. We adopt biologically
inspired approaches for wireless sensor networks. Agent operates
automatically with their behavior policies as a gene. Agent aggregates
other agents to reduce communication and gives high priority to nodes
that have enough energy to communicate. Agent behavior policies are
optimized by genetic operation at the base station. Simulation results
show that our proposed framework increases the lifetime of each node.
Each agent selects a next-hop node with neighbor information and
behavior policies. Our proposed framework provides self-healing,
self-configuration, self-optimization properties to sensor nodes.
Abstract: The Deoxyribonucleic Acid (DNA) which is a doublestranded helix of nucleotides consists of: Adenine (A), Cytosine (C), Guanine (G) and Thymine (T). In this work, we convert this genetic code into an equivalent digital signal representation. Applying a wavelet transform, such as Haar wavelet, we will be able to extract details that are not so clear in the original genetic code. We compare between different organisms using the results of the Haar wavelet Transform. This is achieved by using the trend part of the signal since the trend part bears the most energy of the digital signal representation. Consequently, we will be able to quantitatively reconstruct different biological families.
Abstract: This paper reports a new pattern recognition approach for face recognition. The biological model of light receptors - cones and rods in human eyes and the way they are associated with pattern vision in human vision forms the basis of this approach. The functional model is simulated using CWD and WPD. The paper also discusses the experiments performed for face recognition using the features extracted from images in the AT & T face database. Artificial Neural Network and k- Nearest Neighbour classifier algorithms are employed for the recognition purpose. A feature vector is formed for each of the face images in the database and recognition accuracies are computed and compared using the classifiers. Simulation results show that the proposed method outperforms traditional way of feature extraction methods prevailing for pattern recognition in terms of recognition accuracy for face images with pose and illumination variations.
Abstract: Modeling and simulation of biochemical reactions is of great interest in the context of system biology. The central dogma of this re-emerging area states that it is system dynamics and organizing principles of complex biological phenomena that give rise to functioning and function of cells. Cell functions, such as growth, division, differentiation and apoptosis are temporal processes, that can be understood if they are treated as dynamic systems. System biology focuses on an understanding of functional activity from a system-wide perspective and, consequently, it is defined by two hey questions: (i) how do the components within a cell interact, so as to bring about its structure and functioning? (ii) How do cells interact, so as to develop and maintain higher levels of organization and functions? In recent years, wet-lab biologists embraced mathematical modeling and simulation as two essential means toward answering the above questions. The credo of dynamics system theory is that the behavior of a biological system is given by the temporal evolution of its state. Our understanding of the time behavior of a biological system can be measured by the extent to which a simulation mimics the real behavior of that system. Deviations of a simulation indicate either limitations or errors in our knowledge. The aim of this paper is to summarize and review the main conceptual frameworks in which models of biochemical networks can be developed. In particular, we review the stochastic molecular modelling approaches, by reporting the principal conceptualizations suggested by A. A. Markov, P. Langevin, A. Fokker, M. Planck, D. T. Gillespie, N. G. van Kampfen, and recently by D. Wilkinson, O. Wolkenhauer, P. S. Jöberg and by the author.
Abstract: The article presents test results on the changes
occurring in sewage sludge during the process of its storage. Tests
were conducted on mechanically dehydrated sewage sludge derived
from large municipal sewage treatment plants equipped with
biological sewage treatment systems. In testing presented in the paper
the focus was on the basic fuel properties of sewage sludge: moisture
content, heat of combustion, carbon share. In the first part of the
article the overview of the issues concerning the sewage sludge
management is presented and the genesis of tests is explained.
Further in the paper, selected results of conducted tests are discussed.
Changes in tested parameters were determined in the period of a 10-
month sewage storage.
Abstract: A Laboratory-scale packed bed reactor with microbial
cellulose as the biofilm carrier was used to investigate the
denitrification of high-strength nitrate wastewater with specific
emphasis on the effect the nitrogen loading rate and hydraulic
retention time. Ethanol was added as a carbon source for
denitrification. As a result of this investigation, it was found that up
to 500 mg/l feed nitrate concentration the present system is able to
produce an effluent with nitrate content below 10 ppm at 3 h
hydraulic retention time. The highest observed denitrification rate
was 4.57 kg NO3-N/ (m3 .d) at a nitrate load of 5.64 kg NO3-
N/(m3 .d), and removal efficiencies higher than 90% were obtained
for loads up to 4.2 kg NO3-N/(m3 .d). A mass relation between COD
consumed and NO3-N removed around 2.82 was observed. This
continuous-flow bioreactor proved an efficient denitrification system
with a relatively low retention time.
Abstract: An experiment was conducted in October 2008 due the ability replacement plant associate biofertilizers by chemical fertilizers and the qualifying rate of chemical N fertilizers at the moment of using this biofertilizers and the interaction of this biofertilizer on each other. This field experiment has been done in Persepolis (Throne of Jamshid) and arrange by using factorial with the basis of randomized complete block design, in three replication Azespirilium SP bacteria has been admixed with consistence 108 cfu/g and inoculated with seeds of wheat, The streptomyces SP has been used in amount of 550 gr/ha and concatenated on clay and for the qualifying range of chemical fertilizer 4 level of N chemical fertilizer from the source of urea (N0=0, N1=60, N2=120, N3=180) has been used in this experiment. The results indicated there were Significant differences between levels of Nitrogen fertilizer in the entire characteristic which has been measured in this experiment. The admixed Azespirilium SP showed significant differences between their levels in the characteristics such as No. of fertile ear, No. of grain per ear, grain yield, grain protein percentage, leaf area index and the agronomic fertilizer use efficiency. Due the interaction streptomyses with Azespirilium SP bacteria this actinomycet didn-t show any statistically significant differences between it levels.
Abstract: In the last decade, carbohydrates have attracted great
attention as renewable resources for the chemical industry.
Carbohydrates are abundantly found in nature in the form of
monomers, oligomers and polymers, or as components of
biopolymers and other naturally occurring substances. As natural
products, they play important roles in conferring certain physical,
chemical, and biological properties to their carrier molecules.The
synthesis of this particular carbohydrate glycomonomer is part of our
work to obtain biodegradable polymers. Our current paper describes
the synthesis and characterization of a novel carbohydrate
glycomonomer starting from D-glucose, in several synthesis steps,
that involve the protection/deprotection of the D-glucose ring via
acetylation, tritylation, then selective deprotection of the aromaticaliphatic
protective group, in order to obtain 1,2,3,4-tetra-O-acetyl-
6-O-allyl-β-D-glucopyranose. The glycomonomer was then obtained
by the allylation in drastic conditions of 1,2,3,4-tetra-O-acetyl-6-Oallyl-
β-D-glucopyranose with allylic alcohol in the presence of
stannic chloride, in methylene chloride, at room temperature. The
proposed structure of the glycomonomer, 2,3,4-tri-O-acetyl-1,6-di-
O-allyl-β-D-glucopyranose, was confirmed by FTIR, NMR and
HPLC-MS spectrometry. This glycomonomer will be further
submitted to copolymerization with certain acrylic or methacrylic
monomers in order to obtain competitive plastic materials for
applications in the biomedical field.
Abstract: In a transcutanious inductive coupling of a biomedical
implant, a new formula is given for the study of the Radio Frequency
power attenuation by the biological tissue. The loss of the signal
power is related to its interaction with the biological tissue and the
composition of this one. A confrontation with the practical
measurements done with a synthetic muscle into a Faraday cage,
allowed a checking of the obtained theoretical results. The
supply/data transfer systems used in the case of biomedical implants,
can be well dimensioned by taking in account this type of power
attenuation.
Abstract: The dynamic speckle or biospeckle is an interference
phenomenon generated at the reflection of a coherent light by an
active surface or even by a particulate or living body surface. The
above mentioned phenomenon gave scientific support to a method
named biospeckle which has been employed to study seed viability,
biological activity, tissue senescence, tissue water content, fruit
bruising, etc. Since the above mentioned method is not invasive and
yields numerical values, it can be considered for possible automation
associated to several processes, including selection and sorting.
Based on these preliminary considerations, this research work
proposed to study the interaction of a laser beam with vegetative
samples by measuring the incident light intensity and the transmitted
light beam intensity at several vegetative slabs of varying thickness.
Tests were carried on fifteen slices of apple tissue divided into three
thickness groups, i.e., 4 mm, 5 mm, 18 mm and 22 mm. A diode laser
beam of 10mW and 632 nm wavelength and a Samsung digital
camera were employed to carry the tests. Outgoing images were
analyzed by comparing the gray gradient of a fixed image column of
each image to obtain a laser penetration scale into the tissue,
according to the slice thickness.
Abstract: Estimation of stature is an important step in developing a biological profile for human identification. It may provide a valuable indicator for unknown individual in a population. The aim of this study was to analyses the relationship between stature and lower limb dimensions in the Malaysian population. The sample comprised 100 corpses, which included 69 males and 31 females between age ranges of 20 to 90 years old. The parameters measured were stature, thigh length, lower leg length, leg length, foot length, foot height and foot breadth. Results showed that mean values in males were significantly higher than those in females (P < 0.05). There were significant correlations between lower limb dimensions and stature. Cross-validation of the equation on 100 individuals showed close approximation between known stature and estimated stature. It was concluded that lower limb dimensions were useful for estimation of stature, which should be validated in future studies.
Abstract: The treatment of the industrial wastewater can be
particularly difficult in the presence of toxic compounds. Excessive
concentration of Chromium in soluble form is toxic to a wide variety
of living organisms. Biological removal of heavy metals using natural
and genetically engineered microorganisms has aroused great interest
because of its lower impact on the environment. Ralston
metallidurans, formerly known as Alcaligenes eutrophus is a LProteobacterium
colonizing industrial wastewater with a high content
of heavy metals. Tris-buffered mineral salt medium was used for
growing Alcaligenes eutrophus AE104 (pEBZ141). The cells were
cultivated for 18 h at 30 oC in Tris-buffered mineral salt medium
containing 3 mM disodium sulphate and 46 mM sodium gluconate as
the carbon source. The cells were harvested by centrifugation,
washed, and suspended in 10 mM Tris HCl, pH 7.0, containing 46
mM sodium gluconate, and 5 mM Chromium. Interaction among
induction of chr resistance determinant, and chromate reduction have
been demonstrated. Results of this study show that the above bacteria
can be very useful for bioremediation of chromium from industrial
wastewater.
Abstract: This research work proposed a study of fruit bruise detection by means of a biospeckle method, selecting the papaya fruit (Carica papaya) as testing body. Papaya is recognized as a fruit of outstanding nutritional qualities, showing high vitamin A content, calcium, carbohydrates, exhibiting high popularity all over the world, considering consumption and acceptability. The commercialization of papaya faces special problems which are associated to bruise generation during harvesting, packing and transportation. Papaya is classified as climacteric fruit, permitting to be harvested before the maturation is completed. However, by one side bruise generation is partially controlled once the fruit flesh exhibits high mechanical firmness. By the other side, mechanical loads can set a future bruise at that maturation stage, when it can not be detected yet by conventional methods. Mechanical damages of fruit skin leave an entrance door to microorganisms and pathogens, which will cause severe losses of quality attributes. Traditional techniques of fruit quality inspection include total soluble solids determination, mechanical firmness tests, visual inspections, which would hardly meet required conditions for a fully automated process. However, the pertinent literature reveals a new method named biospeckle which is based on the laser reflectance and interference phenomenon. The laser biospeckle or dynamic speckle is quantified by means of the Moment of Inertia, named after its mechanical counterpart due to similarity between the defining formulae. Biospeckle techniques are able to quantify biological activities of living tissues, which has been applied to seed viability analysis, vegetable senescence and similar topics. Since the biospeckle techniques can monitor tissue physiology, it could also detect changes in the fruit caused by mechanical damages. The proposed technique holds non invasive character, being able to generate numerical results consistent with an adequate automation. The experimental tests associated to this research work included the selection of papaya fruit at different maturation stages which were submitted to artificial mechanical bruising tests. Damages were visually compared with the frequency maps yielded by the biospeckle technique. Results were considered in close agreement.
Abstract: In order to study the effect of phosphate solubilization
microorganisms (PSM) and plant growth promoting rhizobacteria
(PGPR) on yield and yield components of corn Zea mays (L. cv.
SC604) an experiment was conducted at research farm of Sari
Agricultural Sciences and Natural Resources University, Iran during
2007. Experiment laid out as split plot based on randomized
complete block design with three replications. Three levels of
manures (consisted of 20 Mg.ha-1 farmyard manure, 15 Mg.ha-1 green
manure and check or without any manures) as main plots and eight
levels of biofertilizers (consisted of 1-NPK or conventional fertilizer
application; 2-NPK+PSM+PGPR; 3 NP50%K+PSM+PGPR; 4-
N50%PK+PSM +PGPR; 5-N50%P50%K+PSM+ PGPR; 6-PK+PGPR; 7-
NK+PSM and 8-PSM+PGPR) as sub plots were treatments. Results
showed that farmyard manure application increased row number, ear
weight, grain number per ear, grain yield, biological yield and
harvest index compared to check. Furthermore, using of PSM and
PGPR in addition to conventional fertilizer applications (NPK) could
improve ear weight, row number and grain number per row and
ultimately increased grain yield in green manure and check plots.
According to results in all fertilizer treatments application of PSM
and PGPR together could reduce P application by 50% without any
significant reduction of grain yield. However, this treatment could
not compensate 50% reduction of N application.
Abstract: The Egyptian Bacillus thuringiensis isolate (M5) produce crystal proteins that is toxic against insects was irradiated with UV light to induce mutants. Upon testing 10 of the resulting mutants for their toxicity against cotton leafworm larvae, the three mutants 62, 64 and 85 proved to be the most toxic ones. Upon testing these mutants along with their parental isolate by SDS-PAGE analysis of spores-crystals proteins as well as vegetative cells proteins, new induced bands appeared in the three mutants by UV radiation and also they showed disappearance of some other bands as compared with the wild type isolate. Multiplex PCR technique, with five sets of specific primers, was used to detect the three types of cryI genes cryIAa, cryIAb and cryIAc. Results showed that these three genes exist, as distinctive bands, in the wild type isolate (M5) as well as in mutants 62 and 85, while the mutant 64 had two distinctive bands of cryIAb and cryIAc genes, and a faint band of cryI Aa gene. Finally, these results revealed that mutant 62 is considered as the promising mutant since it is UV resistant, highly toxic against Spodoptera littoralis and active against a wide range of Lepidopteran insects.
Abstract: This research project aims to investigate difference in
relative rates concerning phosphoryl transfer relevant to biological
catalysis of DNA and RNA in the pH-independent reactions.
Activated Models of DNA and RNA for alkyl-aryl phosphate diesters
(with 4-nitrophenyl as a good leaving group) have successfully been
prepared to gather kinetic parameters. Eyring plots for the pH–
independent hydrolysis of 1 and 2 were established at different
temperatures in the range 100–160 °C. These measurements have
been used to provide a better estimate for the difference in relative
rates between the reactivity of DNA and RNA cleavage. Eyring plot
gave an extrapolated rate of kH2O = 1 × 10-10 s -1 for 1 (RNA model)
and 2 (DNA model) at 25°C. Comparing the reactivity of RNA
model and DNA model shows that the difference in relative rates in
the pH-independent reactions is surprisingly very similar at 25°. This
allows us to obtain chemical insights into how biological catalysts
such as enzymes may have evolved to perform their current
functions.
Abstract: The chemistry of sulphone hydrazide has gained increase interest in both synthetic organic chemistry and biological fields and has considerable value. The therapeutic importance of these compounds is the attractive force to continue research in such a point. The present review covers the literature up to date for the synthesis, reactions and applications of such compounds.
Abstract: Microarrays have become the effective, broadly used tools in biological and medical research to address a wide range of problems, including classification of disease subtypes and tumors. Many statistical methods are available for analyzing and systematizing these complex data into meaningful information, and one of the main goals in analyzing gene expression data is the detection of samples or genes with similar expression patterns. In this paper, we express and compare the performance of several clustering methods based on data preprocessing including strategies of normalization or noise clearness. We also evaluate each of these clustering methods with validation measures for both simulated data and real gene expression data. Consequently, clustering methods which are common used in microarray data analysis are affected by normalization and degree of noise and clearness for datasets.
Abstract: In order to study seed yield and seed yield
components in bean under reduced irrigation condition and
assessment drought tolerance of genotypes, 15 lines of White beans
were evaluated in two separate RCB design with 3 replications under
stress and non stress conditions. Analysis of variance showed that
there were significant differences among varieties in terms of traits
under study, indicating the existence of genetic variation among
varieties. The results indicate that drought stress reduced seed yield,
number of seed per plant, biological yield and number of pod in
White been. In non stress condition, yield was highly correlated with
the biological yield, whereas in stress condition it was highly
correlated with harvest index. Results of stepwise regression showed
that, selection can we done based on, biological yield, harvest index,
number of seed per pod, seed length, 100 seed weight. Result of path
analysis showed that the highest direct effect, being positive, was
related to biological yield in non stress and to harvest index in stress
conditions. Factor analysis were accomplished in stress and nonstress
condition a, there were 4 factors that explained more than 76
percent of total variations. We used several selection indices such as
Stress Susceptibility Index ( SSI ), Geometric Mean Productivity (
GMP ), Mean Productivity ( MP ), Stress Tolerance Index ( STI ) and
Tolerance Index ( TOL ) to study drought tolerance of genotypes, we
found that the best Stress Index for selection tolerance genotypes
were STI, GMP and MP were the greatest correlations between these
Indices and seed yield under stress and non stress conditions. In
classification of genotypes base on phenotypic characteristics, using
cluster analysis ( UPGMA ), all allels classified in 5 separate groups
in stress and non stress conditions.