Abstract: In this study, a high accuracy protein-protein interaction
prediction method is developed. The importance of the proposed
method is that it only uses sequence information of proteins while
predicting interaction. The method extracts phylogenetic profiles of
proteins by using their sequence information. Combining the phylogenetic
profiles of two proteins by checking existence of homologs
in different species and fitting this combined profile into a statistical
model, it is possible to make predictions about the interaction status
of two proteins.
For this purpose, we apply a collection of pattern recognition
techniques on the dataset of combined phylogenetic profiles of protein
pairs. Support Vector Machines, Feature Extraction using ReliefF,
Naive Bayes Classification, K-Nearest Neighborhood Classification,
Decision Trees, and Random Forest Classification are the methods
we applied for finding the classification method that best predicts
the interaction status of protein pairs. Random Forest Classification
outperformed all other methods with a prediction accuracy of 76.93%
Abstract: Different techniques for estimating seasonal water
use from soil profile water depletion frequently do not account for
flux below the root zone. Shallow water table contribution to supply
crop water use may be important in arid and semi-arid regions.
Development of predictive root uptake models, under influence of
shallow water table makes it possible for planners to incorporate
interaction between water table and root zone into design of irrigation
projects. A model for obtaining soil moisture depletion from root
zone and water movement below it is discussed with the objective to
determine impact of shallow water table on seasonal moisture
depletion patterns under water table depth variation, up to the bottom
of root zone. The role of different boundary conditions has also been
considered. Three crops: Wheat (Triticum aestivum), Corn (Zea
mays) and Potato (Solanum tuberosum), common in arid & semi-arid
regions, are chosen for the study. Using experimentally obtained soil
moisture depletion values for potential soil moisture conditions,
moisture depletion patterns using a non linear root uptake model have
been obtained for different water table depths. Comparative analysis
of the moisture depletion patterns under these conditions show a wide
difference in percent depletion from different layers of root zone
particularly top and bottom layers with middle layers showing
insignificant variation in moisture depletion values. Moisture
depletion in top layer, when the water table rises to root zone
increases by 19.7%, 22.9% & 28.2%, whereas decrease in bottom
layer is 68.8%, 61.6% & 64.9% in case of wheat, corn & potato
respectively. The paper also discusses the causes and consequences
of increase in moisture depletion from top layers and exceptionally
high reduction in bottom layer, and the possible remedies for the
same. The numerical model developed for the study can be used to
help formulating irrigation strategies for areas where shallow
groundwater of questionable quality is an option for crop production.
Abstract: Hypertension is characterized with stress on the heart and blood vessels thus increasing the risk of heart attack and renal diseases. The Renin angiotensin system (RAS) plays a major role in blood pressure control. Renin is the enzyme that controls the RAS at the rate-limiting step. Our aim is to develop new drug-like leads which can inhibit renin and thereby emerge as therapeutics for hypertension. To achieve this, molecular dynamics (MD) simulation and receptor-based pharmacophore modeling were implemented, and three rennin-inhibitor complex structures were selected based on IC50 value and scaffolds of inhibitors. Three pharmacophore models were generated considering conformations induced by inhibitor. The compounds mapped to these models were selected and subjected to drug-like screening. The identified hits were docked into the active site of renin. Finally, hit1 satisfying the binding mode and interaction energy was selected as possible lead candidate to be used in novel renin inhibitors.
Abstract: A numerical simulation of vortex-induced vibration of
a 2-dimensional elastic circular cylinder with two degree of freedom
under the uniform flow is calculated when Reynolds is 200.
2-dimensional incompressible Navier-Stokes equations are solved
with the space-time finite element method, the equation of the cylinder
motion is solved with the new explicit integral method and the mesh
renew is achieved by the spring moving mesh technology. Considering
vortex-induced vibration with the low reduced damping parameter, the
variety trends of the lift coefficient, the drag coefficient, the
displacement of cylinder are analyzed under different oscillating
frequencies of cylinder. The phenomena of locked-in, beat and
phases-witch were captured successfully. The evolution of vortex
shedding from the cylinder with time is discussed. There are very
similar trends in characteristics between the results of the one degree
of freedom cylinder model and that of the two degree of freedom
cylinder model. The streamwise vibrations have a certain effect on the
lateral vibrations and their characteristics.
Abstract: TiO2 nanoparticles were synthesized by hydrothermal
method at 180°C from TiOSO4 aqueous solution with1m/l
concentration. The obtained products were coated with silica by
means of a seeded polymerization technique for a coating time of
1440 minutes to obtain well defined TiO2@SiO2 core-shell structure.
The uncoated and coated nanoparticles were characterized by using
X-Ray diffraction technique (XRD), Fourier Transform Infrared
Spectroscopy (FT-IR) to study their physico-chemical properties.
Evidence from XRD and FTIR results show that SiO2 is
homogenously coated on the surface of titania particles. FTIR spectra
show that there exists an interaction between TiO2 and SiO2 and
results in the formation of Ti-O-Si chemical bonds at the interface of
TiO2 particles and SiO2 coating layer. The non linear optical limiting
properties of TiO2 and TiO2@SiO2 nanoparticles dispersed in
ethylene glycol were studied at 532nm using 5ns Nd:YAG laser
pulses. Three-photon absorption is responsible for optical limiting
characteristics in these nanoparticles and it is seen that the optical
nonlinearity is enhanced in core-shell structures when compared with
single counterparts. This effective three-photon type absorption at
this wavelength, is of potential application in fabricating optical
limiting devices.
Abstract: The purpose of this study is to explore how the emotions at the moment of conflict escalation are expressed nonverbally and how it can be detected by the parties involved in the conflicting situation. The study consists of two parts, in the first part it starts with the definition of "conflict" and "nonverbal communication". Further it includes the analysis of emotions and types of emotions, which may bring to the conflict escalation. Four types of emotions and emotion constructs are analyzed, particularly fear, anger, guilt and frustration. The second part of the study analyses the general role of nonverbal behavior in interaction and communication, which information it may give during communication to the person, who sends or receives those signals. The study finishes with the analysis of the nonverbal expression of analyzed emotions and on how it can be used during interaction.
Abstract: Twenty four male Thai native × Anglo-Nubian
crossbred goats were randomly allocated to receive four treatments.
The experiment was conducted for four months and slaughtered that
the Longissimus dorsi muscle was collected for fatty acid analysis.
The results conclude that either castrated method or ages had no
significantly different on monounsaturated fatty acid (MUFA)
(P>0.05) except erucic acid (C22:1n9). Interaction between castrated
method and ages had significantly different in MUFA (P
Abstract: A new mechanism responsible for structural life
consumption due to resonant fatigue in turbine blades, or vanes, is
presented and explained. A rotating blade or vane in a gas turbine can
change its contour due to erosion and/or material build up, in any of
these instances, the surface pressure distribution occurring on the
suction and pressure sides of blades-vanes can suffer substantial
modification of their pressure and temperatures envelopes and flow
characteristics. Meanwhile, the relative rotation between the blade
and duct vane while the pressurized gas flows and the consequent
wake crossings, will induce a fluctuating thrust force or lift that will
excite the blade.
An actual totally used up set of vane-blade components in a HP
turbine power stage in a gas turbine is analyzed. The blade suffered
some material erosion mostly at the trailing edge provoking a
peculiar surface pressure envelope which evolved as the relative
position between the vane and the blade passed in front of each other.
Interestingly preliminary modal analysis for this eroded blade
indicates several natural frequencies within the aeromechanic power
spectrum, moreover, the highest frequency component is 94% of one
natural frequency indicating near resonant condition.
Independently of other simultaneously occurring fatigue cycles
(such as thermal, centrifugal stresses).
Abstract: Software engineering education not only embraces
technical skills of software development but also necessitates
communication and interaction among learners. In this paper, it is
proposed to adapt the PBL methodology that is especially designed to
be integrated into software engineering classroom in order to promote
collaborative learning environment. This approach helps students
better understand the significance of social aspects and provides a
systematic framework to enhance teamwork skills. The adaptation of
PBL facilitates the transition to an innovative software development
environment where cooperative learning can be actualized.
Abstract: Development of knowledge based society carries multiple challenges to the higher education system. Some of the challenges laid before the higher education sector of countries which aspire to become knowledge based societies are: the entrepreneurial leadership of the higher education institutions, finding new sources of financing in order to minimize dependence on public resources, creating connections with the labor market, commercial utilization of R&D results, promotion of innovations as well as the overall promotion of science excellence relevant to the economic sector. Within a framework of this paper and its main subject of research, the challenge which is being put before the higher education institutions is an effort of establishing regional mission of higher education through the open collaboration with regional key factors, both private and public. Development of the mentioned collaboration and its contribution to the overall regional development in Croatia is the main subject of empirical research in this paper.
Abstract: With advances in computer vision, non-contact gaze tracking systems are heading towards being much easier to operate and more comfortable for use, the technique proposed in this paper is specially designed for achieving these goals. For the convenience in operation, the proposal aims at the system with simple configuration which is composed of a fixed wide angle camera and dual infrared illuminators. Then in order to enhance the usability of the system based on single camera, a self-adjusting method which is called Real-time gaze Tracking Algorithm with head movement Compensation (RTAC) is developed for estimating the gaze direction under natural head movement and simplifying the calibration procedure at the same time. According to the actual evaluations, the average accuracy of about 1° is achieved over a field of 20×15×15 cm3.
Abstract: This paper presents a fuzzy control system for a three degree of freedom (3-DOF) stabilized platform with explicit decoupling scheme. The system under consideration is a system with strong interactions between three channels. By using the concept of decentralized control, a control structure is developed that is composed of three control loops, each of which is associated with a single-variable fuzzy controller and a decoupling unit. Takagi-Sugeno (TS) fuzzy control algorithm is used to implement the fuzzy controller. The decoupling units design is based on the adaptive theory reasoning. Simulation tests were established using Simulink of Matlab. The obtained results have demonstrated the feasibility and effectiveness of the proposed approach. Simulation results are represented in this paper.
Abstract: Biplot can be used to evaluate cultivars for their oil
percent potential and stability and to evaluate trial sites for their
discriminating ability and representativeness. Multi-environmental
trial (MET) data for oil percent of 10 open pollinating sunflower
cultivars were analyzed to investigate the genotype-environment
interactions. The genotypes were evaluated in four locations with
different climatic conditions in Iran in 2010. In each location, a
Randomized Complete Block design with four replications was used.
According to both mean and stability, Zaria, Master and R453, had
highest performances among all cultivars. The graphical analysis
identified best cultivar for each environment. Cultivars Berezans and
Record performed best in Khoy and Islamabad. Zaria and R453 were
the best genotypes in Sari and Karaj followed by Master and Favorit.
The GGE bi-plot indicated two mega-environments, group one
contained Karaj, Khoy and Islamabad and the second group
contained Sari. The best discriminating location was Karaj followed
with Khoy, Islamabad and Sari. The best representative genotypes
were Zaria, R453, Master and Favorit. Ranking of ten cultivars based
their oil percent was as Zaria > R453 ≈ Master ≈ Favorit > Record ≈
Berezans > Sor > Lakumka > Bulg3 > Bulg5.
Abstract: This study include the effect of strain and storage
period and their interaction on some quantitative and qualitative traits
and percentages of the egg components in the eggs collected at the
start of production (at age 24 weeks). Eggs were divided into three
storage periods (1, 7 and 14) days under refrigerator temperature (5-
7)0C. Fifty seven eggs obtained randomly from each strain including
Isa Brown and Lohman White. General Linear Model within
SAS programme was used to analyze the collected data
and correlations between the studied traits were calculated for each
strain.Average egg weight (EW), Haugh Unit (HU), yolk index (YI),
yolk % (HP), albumin % (AP) and yolk to albumin ratio (YAR) was
56.629 gm, 87.968 %, 0.493, 22.13%, 67.74% and 32.76
respectively. Egg produced from ISA Brown surpassed those
produced by Lohman White significantly (P
Abstract: In the last years numerous applications of Human-
Computer Interaction have exploited the capabilities of Time-of-
Flight cameras for achieving more and more comfortable and precise
interactions. In particular, gesture recognition is one of the most active
fields. This work presents a new method for interacting with a virtual
object in a 3D space. Our approach is based on the fusion of depth
data, supplied by a ToF camera, with color information, supplied
by a HD webcam. The hand detection procedure does not require
any learning phase and is able to concurrently manage gestures of
two hands. The system is robust to the presence in the scene of
other objects or people, thanks to the use of the Kalman filter for
maintaining the tracking of the hands.
Abstract: Solidarity and kinship has long been an intangible
emblem to Malay community especially in the rural area. It is visibly
seen through the dependability among each unit of the community
either in religious and social events including the matrimonial or
wedding. Nevertheless, the inevitable phenomenon, modernization
legitimately alters every facets of human life not only the routines,
traditions, rituals, norms but also to the daily activities and the
specific occasion. Using triangulation approach of interview and self
completed questionnaire this study empirically examine the level of
alteration of Malays wedding foodways which relate to the
preparation and consumption of it and its impact on the community
social bonding. Some meaningful insights were obtained whereby
modernization through technology (modern equipments) and social
factors (education, migration, and high disposal income) significantly
contribute to the alteration of wedding foodways from preparation up
to consumption stages. The domino effect of this alteration
consequently leads to the fragility of social kinship or somehow
reduced cohesiveness and interaction among the individual of Malay
society in the rural area.
Abstract: The effect of flooding can be a serious problem for
wheat farmers, even at dry land condition. Amount of flooding
damage depends on duration flooding, developmental stage, wheat
type and variety. Therefore as a factorial experiment in randomized
complete design based on winter bread wheat cultivars (Pishtaz,
Marvdasht, Shiraz, Zarin, Shahriar, C-81-4, Sardari, Agosta seed,
FGS and Azar2) at stages (Non- flooding stress, flooding at tillering
and stem elongation stages for 15 days) carried out in Faculty of
Agriculture, Razi University, Kermanshah, Iran. During flooding,
soil environment of plant roots were water saturated. Analysis of
variance showed that flooding had a significant effect on the number
of grains per spike, grain weight per spike and a grain weight. Hence
flooding reduces the number of grain per spike between 27.1 to 42.5
percent, grain weight per spike between 34.7 to 54.4 percent and
single grain weight between 12.1 to 15.1 percent. Effects of flooding
at the tillering stage reduced higher than stem elongation stage on
studied traits. The result also showed that flooding at tillering stage
delayed spikelet primordial and floret. Between wheat cultivars was
significant for traits, but were different reactions. "Shiraz", "Zarin"
and "Shahriar" had the most no. grain per spike, but "Zarin" and
"Sardari" had the most grain weight per spike and single grain
weight, respectively. Also, interaction between start of flooding and
cultivar was significant.
Abstract: The activities which are mostly related to the environmental performance need to be pointed, especially how logistics systems influence on environmental performance. This paper analyses how company could lead the initiative in this area by incorporating environmental management principles into their daily activities. The analysis is based on literature review about logistics and environment, the information from company R website as well as face-to-face interviews. A case study is given to show how they can turn practices into green while simultaneously meet the efficiency objectives. The research results show that the adoption of EMS and ISO 14001 certification is an effective tool for the logistics management. Such practices simultaneously reduce the negative contribute to better company performance. The results also show that the emissions to air and water, and energy consumption are the main logistics impacts to the environment.
Abstract: The expansion mechanism of a partially ionized plasma produced by laser interaction with solid target (copper) is studied. For this purpose we use a hydrodynamical model which includes a source term combined with Saha's equation. The obtained self-similar solution in the limit of quasi-neutrality shows that the expansion, at the earlier stage, is driven by the combination of thermal pressure and electrostatic potential. They are of the same magnitude. The initial ionized fraction and the temperature are the leading parameters of the expanding profiles,
Abstract: This paper presents the use of a semi-classical signal
analysis method that has been developed recently for the analysis of
turbomachinery flow unsteadiness. We will focus on the correlation
between theSemi-Classical Signal Analysis parameters and some
physical parameters in relation with turbomachinery features. To
demonstrate the potential of the proposed approach, a static pressure
signal issued from a rotor/stator interaction of a centrifugal pump is
studied. Several configurations of the pump are compared.