Abstract: A new approach to predict the 3D structures of proteins by combining the knowledge-based method and Molecular Dynamics Simulation is presented on the chicken villin headpiece subdomain (HP-36). Comparative modeling is employed as the knowledge-based method to predict the core region (Ala9-Asn28) of the protein while the remaining residues are built as extended regions (Met1-Lys8; Leu29-Phe36) which then further refined using Molecular Dynamics Simulation for 120 ns. Since the core region is built based on a high sequence identity to the template (65%) resulting in RMSD of 1.39 Å from the native, it is believed that this well-developed core region can act as a 'nucleation center' for subsequent rapid downhill folding. Results also demonstrate that the formation of the non-native contact which tends to hamper folding rate can be avoided. The best 3D model that exhibits most of the native characteristics is identified using clustering method which then further ranked based on the conformational free energies. It is found that the backbone RMSD of the best model compared to the NMR-MDavg is 1.01 Å and 3.53 Å, for the core region and the complete protein, respectively. In addition to this, the conformational free energy of the best model is lower by 5.85 kcal/mol as compared to the NMR-MDavg. This structure prediction protocol is shown to be effective in predicting the 3D structure of small globular protein with a considerable accuracy in much shorter time compared to the conventional Molecular Dynamics simulation alone.
Abstract: Autism Spectrum Disorders (ASDs) are characterized
by abnormalities in social interaction and communication, as well as
repetitive and stereotyped behaviors. Although various studies have
been conducted in ASDs etiology across the world, it seems that they
are still unknown in Middle East. Some scientific researches have
been conducted on ASDs in Middle East (ME) especially in
Kingdom of Saudi Arabia (KSA).
A systematic literature review was performed to identify the ASDs
studies in KSA. Accordingly, PubMed, ISI web of Science and
Google were searched to find KSA and ME studies in ASDs. The
main focus of this review work is to outline an improved
understanding of the underpinnings of ASD in order to achieve
therapeutic interventions and we will discuss the main problem we
waiting for solution with reference with role of Transcranial
Magnetic Stimulation (TMS) to modulate cortical activity improve
understanding ASD.
Abstract: The management of the health-care wastes is one of
the most important problems in Istanbul, a city with more than 12
million inhabitants, as it is in most of the developing countries.
Negligence in appropriate treatment and final disposal of the healthcare
wastes can lead to adverse impacts to public health and to the
environment. This paper employs a fuzzy multi-criteria group
decision making approach, which is based on the principles of fusion
of fuzzy information, 2-tuple linguistic representation model, and
technique for order preference by similarity to ideal solution
(TOPSIS), to evaluate health-care waste (HCW) treatment
alternatives for Istanbul. The evaluation criteria are determined
employing nominal group technique (NGT), which is a method of
systematically developing a consensus of group opinion. The
employed method is apt to manage information assessed using multigranularity
linguistic information in a decision making problem with
multiple information sources. The decision making framework
employs ordered weighted averaging (OWA) operator that
encompasses several operators as the aggregation operator since it
can implement different aggregation rules by changing the order
weights. The aggregation process is based on the unification of
information by means of fuzzy sets on a basic linguistic term set
(BLTS). Then, the unified information is transformed into linguistic
2-tuples in a way to rectify the problem of loss information of other
fuzzy linguistic approaches.
Abstract: Advances in processors architecture, such as multicore,
increase the size of complexity of parallel computer systems.
With multi-core architecture there are different parallel languages
that can be used to run parallel programs. One of these languages is
OpenMP which embedded in C/Cµ or FORTRAN. Because of this
new architecture and the complexity, it is very important to evaluate
the performance of OpenMP constructs, kernels, and application
program on multi-core systems. Performance is the activity of
collecting the information about the execution characteristics of a
program. Performance tools consists of at least three interfacing
software layers, including instrumentation, measurement, and
analysis. The instrumentation layer defines the measured
performance events. The measurement layer determines what
performance event is actually captured and how it is measured by the
tool. The analysis layer processes the performance data and
summarizes it into a form that can be displayed in performance tools.
In this paper, a number of OpenMP performance tools are surveyed,
explaining how each is used to collect, analyse, and display data
collection.
Abstract: Increased energy demand and the concern about
environment friendly technology, renewable bio-fuels are better
alternative to petroleum products. In the present study linseed oil was
used as alternative source for diesel engine fuel and the results were
compared with baseline data of neat diesel. Performance parameters
such as brake thermal efficiency (BTE) and brake specific fuel
consumption (BSFC) and emissions parameters such as CO,
unburned hydro carbon (UBHC), NOx, CO2 and exhaust temperature
were compared. BTE of the engine was lower and BSFC was higher
when the engine was fueled with Linseed oil compared to diesel fuel.
Emission characteristics are better than diesel fuel. NOx formation by
using linseed oil during the experiment was lower than diesel fuel.
Linseed oil is non edible oil, so it can be used as an extender of diesel
fuel energy source for small and medium energy needs.
Abstract: Nowadays, keyless entry systems are widely adopted
for vehicle immobilizer systems due to both advantages of security and
convenience. Keyless entry systems could overcome brute-force key
guessing attack, statistics attack and masquerade attack, however,
they can't prevent from thieves stealing behavior. In this paper, we
proposed a new architecture try to improve the existent flaws. The
integration of the keyless entry system and the fingerprint
identification technology is more suitable to implement on the
portable transponder to achieve higher security needs. We also adopt
and modify AES security protocol for life expectancy and security of
the portable transponder. In addition, the identification of a driver's
fingerprint makes the service of automatic reinstatement of a driver's
preferences become possible. Our design can satisfy not only the three
kinds of previous illegal attacks, but also the stealing situation.
Furthermore, many practical factors, such as costs, life expectancy and
performance, have been well considered in the design of portable
transponder.
Abstract: In this study, the performance of a high-frequency arc
welding machine including a two-switch inverter is analyzed. The
control of the system is achieved using two different control
techniques i- fuzzy logic control (FLC) ii- state space averaging
based sliding control. Fuzzy logic control does not need accurate
mathematical model of a plant and can be used in nonlinear
applications. The second method needs the mathematical model of
the system. In this method the state space equations of the system are
derived for two different “on" and “off" states of the switches. The
derived state equations are combined with the sliding control rule
considering the duty-cycle of the converter. The performance of the
system is analyzed by simulating the system using SIMULINK tool
box of MATLAB. The simulation results show that fuzzy logic
controller is more robust and less sensitive to parameter variations.
Abstract: In today-s world, the efficient utilization of wood
resources comes more and more to the mind of forest owners. It is a
very complex challenge to ensure an efficient harvest of the wood
resources. This is one of the scopes the project “Virtual Forest II"
addresses. Its core is a database with data about forests containing
approximately 260 million trees located in North Rhine-Westphalia
(NRW). Based on this data, tree growth simulations and wood
mobilization simulations can be conducted. This paper focuses on the
latter. It describes a discrete-event-simulation with an attached 3-D
real time visualization which simulates timber harvest using trees
from the database with different crop resources. This simulation can
be displayed in 3-D to show the progress of the wood crop. All the
data gathered during the simulation is presented as a detailed
summary afterwards. This summary includes cost-benefit
calculations and can be compared to those of previous runs to
optimize the financial outcome of the timber harvest by exchanging
crop resources or modifying their parameters.
Abstract: Recent fifteen years witnessed fast improvements in the field of humanoid robotics. The human-like robot structure is
more suitable to human environment with its supreme obstacle avoidance properties when compared with wheeled service robots.
However, the walking control for bipedal robots is a challenging task
due to their complex dynamics. Stable reference generation plays a very important role in control.
Linear Inverted Pendulum Model (LIPM) and the Zero Moment Point (ZMP) criterion are applied in a number of studies for stable
walking reference generation of biped walking robots. This paper follows this main approach too. We propose a natural and continuous ZMP reference trajectory for a stable and human-like walk. The ZMP reference trajectories move forward under the sole of the support foot when the robot body is supported by a single leg. Robot center of mass trajectory is obtained
from predefined ZMP reference trajectories by a Fourier series
approximation method. The Gibbs phenomenon problem common with Fourier approximations of discontinuous functions is avoided by employing continuous ZMP references. Also, these ZMP reference
trajectories possess pre-assigned single and double support phases,
which are very useful in experimental tuning work.
The ZMP based reference generation strategy is tested via threedimensional
full-dynamics simulations of a 12-degrees-of-freedom
biped robot model. Simulation results indicate that the proposed reference trajectory generation technique is successful.
Abstract: The purpose of this paper is to present the design and
instrumentation of a new benchmark multivariable nonlinear control
laboratory. The mathematical model of this system may be used to
test the applicability and performance of various nonlinear control
procedures. The system is a two degree-of-freedom robotic arm with
soft and hard (discontinuous) nonlinear terms. Two novel
mechanisms are designed to allow the implementation of adjustable
Coulomb friction and backlash.
Abstract: A statistical optimization was studied to design a media composition to produce optimum cellulolytic enzyme where palm oil mill effluent (POME) as a basal medium and filamentous fungus, Trichoderma reesei RUT-C30 were used in the liquid state bioconversion(LSB). 2% (w/v) total suspended solid, TSS, of the POME supplemented with 1% (w/v) cellulose, 0.5%(w/v) peptone and 0.02% (v/v) Tween 80 was estimated to produce the optimum CMCase activity of 18.53 U/ml through the statistical analysis followed by the faced centered central composite design(FCCCD). The probability values of cellulose (
Abstract: This paper will present the implementation of QoS
policy based system by utilizing rules on Access Control List (ACL)
over Layer 3 (L3) switch. Also presented is the architecture on that
implementation; the tools being used and the result were gathered.
The system architecture has an ability to control ACL rules which are
installed inside an external L3 switch. ACL rules used to instruct the
way of access control being executed, in order to entertain all traffics
through that particular switch. The main advantage of using this
approach is that the single point of failure could be prevented when
there are any changes on ACL rules inside L3 switches. Another
advantage is that the agent could instruct ACL rules automatically
straight away based on the changes occur on policy database without
configuring them one by one. Other than that, when QoS policy
based system was implemented in distributed environment, the
monitoring process can be synchronized easily due to the automate
process running by agent over external policy devices.
Abstract: Retrieval of the surface reflectance is important in the
remotely sensed data analysis to obtain the atmospheric reflectance or
atmospheric correction. The relationship between visible and mid
infrared reflectance over land was investigated and developed in this
study. The surface reflectances of the two visible bands were
measured using a handheld spectroradiometer collected around
Penang Island. In this study, we use the assumption that the 2.1 μm
band is not affected by aerosol and it is transparent to most aerosol
types (except dust). Therefore the satellite observed signal is the
same as the surface signal in 2.1 μm band. The correlation between
the surface reflectance measured by the spectroradiometer in the blue
and red region and the 2.1 μm observed by the satellite has been
established. We investigate five dates of Landsat TM scenes in this
study. The finding obtained by this study indicates that the surface
reflectance can be retrieved from the 2.1 μm band.
Abstract: Proton transfer and hydrogen bonding are two aspects
of the chemistry of hydrogen that respectively govern the behaviour
and structure of many molecules, both simple and complex. All the
theoretical enol and keto conformations of 1,3-diphenyl-1,3-
propandion known as dibenzoylmethane (DBM), have been
investigated by means of atoms in molecules (AIM) theory. It was
found that the most stable conformers are those stabilized by
hydrogen bridges.The aim of the present paper is a thorough
conformational analysis of DBM (with special attention on chelated
cis-enol conformers) in order to obtain detailed information on the
geometrical parameters, relative stabilities and rotational motion of
the phenyl groups. It is also important to estimate the barrier height
for ptoton transfer and hydrogen bond strength, which are the main
factors governing conformational stability.
Abstract: Polypropylene blended with natural oil and pigment additives has been studied. Different formulations for each compound were made into polybag used for cultivation of oil palm seedlings for strength and mechanical properties studies. One group of sample was exposed under normal sunlight to initiate degradation and another group of sample was placed under shaded area for five months. All samples were tested for tensile strength to determine the degradation effects. The tensile strength of directly exposed sunlight samples and shaded area showed up to 50% and 25% degradation respectively. However, similar reduction of Young’s modulus for all samples was found for both exposures. Structural investigations were done using FTIR to detect deformation. The natural additives that were used in the studies were all natural and environmental friendly
Abstract: The power system network is becoming more
complex nowadays and it is very difficult to maintain the stability
of the system. Today-s enhancement of technology makes it
possible to include new energy storage devices in the electric
power system. In addition, with the aid of power electronic
devices, it is possible to independently exchange active and
reactive power flow with the utility grid. The main purpose of this
paper proposes a Proportional – Integral (PI) control based 48 –
pulse Inverter based Static Synchronous Series Compensator
(SSSC) with and without Superconducting Magnetic Energy
Storage (SMES) used for enhancing the transient stability and
regulating power flow in automatic mode. Using a test power
system through the dynamic simulation in Matlab/Simulink
platform validates the performance of the proposed SSSC with and
without SMES system.
Abstract: Soft set theory was initiated by Molodtsov in 1999. In the past years, this theory had been applied to many branches of mathematics, information science and computer science. In 2003, Maji et al. introduced some operations of soft sets and gave some operational rules. Recently, some of these operational rules are pointed out to be not true. Furthermore, Ali et al., in their paper, introduced and discussed some new operations of soft sets. In this paper, we further investigate these operational rules given by Maji et al. and Ali et al.. We obtain some sufficient-necessary conditions such that corresponding operational rules hold and give correct forms for some operational rules. These results will be help for us to use rightly operational rules of soft sets in research and application of soft set theory.
Abstract: Learning using labeled and unlabelled data has
received considerable amount of attention in the machine learning
community due its potential in reducing the need for expensive
labeled data. In this work we present a new method for combining
labeled and unlabeled data based on classifier ensembles. The model
we propose assumes each classifier in the ensemble observes the
input using different set of features. Classifiers are initially trained
using some labeled samples. The trained classifiers learn further
through labeling the unknown patterns using a teaching signals that is
generated using the decision of the classifier ensemble, i.e. the
classifiers self-supervise each other. Experiments on a set of object
images are presented. Our experiments investigate different classifier
models, different fusing techniques, different training sizes and
different input features. Experimental results reveal that the proposed
self-supervised ensemble learning approach reduces classification
error over the single classifier and the traditional ensemble classifier
approachs.
Abstract: The commercial white tyres are usually used for forklifts in food and medicine industries. Conventionally, silica is used as reinforcement in the tyres. However, the adhesion between silica particles and rubber is remarkably poor. To improve the problem of adhesion and hence enhance wear resistance, modification of silica surface is one of the solutions. In this work, the natural rubber compound blending with polyisoprene-coated silica prepared by admicellar polymerization technique was studied to compare with the natural rubber compound of unmodified silica. The surface characterization of modified silica was also examined by SEM, FTIR, and TGA. The results show that polyisoprene-coated silica/natural rubber compound gave better overall mechanical properties, especially wear resistance with the improvement of the adhesion between silica and natural rubber matrix that can be seen in the SEM micrograph.
Abstract: To coop with urbanization issues and the economic need for expansion, the city of Jakarta is planning to reclaim more land in the Jakarta Bay. However, the reclamation activities of some islands have barely started and already the developers are facing difficulties in finding sufficient quantities of sand as fill material. When addressing the problem of sand scarcity in the case of Jakarta where, an excess of waste production, an inadequate solid waste management system and a lack of dumping ground pose a major problem, it is hard not to think of the use of waste as alternative fill material. This paper analyses the possibilities of using waste in the land reclamation projects, considering the governmental, social, environmental and economic context of the city. The results identify types of waste that could be used, ways of using those types of waste and implementation conditions for the city of Jakarta.