Abstract: Advances in processors architecture, such as multicore,
increase the size of complexity of parallel computer systems.
With multi-core architecture there are different parallel languages
that can be used to run parallel programs. One of these languages is
OpenMP which embedded in C/Cµ or FORTRAN. Because of this
new architecture and the complexity, it is very important to evaluate
the performance of OpenMP constructs, kernels, and application
program on multi-core systems. Performance is the activity of
collecting the information about the execution characteristics of a
program. Performance tools consists of at least three interfacing
software layers, including instrumentation, measurement, and
analysis. The instrumentation layer defines the measured
performance events. The measurement layer determines what
performance event is actually captured and how it is measured by the
tool. The analysis layer processes the performance data and
summarizes it into a form that can be displayed in performance tools.
In this paper, a number of OpenMP performance tools are surveyed,
explaining how each is used to collect, analyse, and display data
collection.
Abstract: The size, complexity and number of databases used
for protein information have caused bioinformatics to lag behind in
adapting to the need to handle this distributed information.
Integrating all the information from different databases into one
database is a challenging problem. Our main research is to develop a
tool which can be used to access and manipulate protein information
from difference databases. In our approach, we have integrated
difference databases such as Swiss-prot, PDB, Interpro, and EMBL
and transformed these databases in flat file format into relational
form using XML and Bioperl. As a result, we showed this tool can
search different sizes of protein information stored in relational
database and the result can be retrieved faster compared to flat file
database. A web based user interface is provided to allow user to
access or search for protein information in the local database.