Abstract: The protein domain structure has been widely used as the most informative sequence feature to computationally predict protein-protein interactions. However, in a recent study, a research group has reported a very high accuracy of 94% using hydrophobicity feature. Therefore, in this study we compare and verify the usefulness of protein domain structure and hydrophobicity properties as the sequence features. Using the Support Vector Machines (SVM) as the learning system, our results indicate that both features achieved accuracy of nearly 80%. Furthermore, domains structure had receiver operating characteristic (ROC) score of 0.8480 with running time of 34 seconds, while hydrophobicity had ROC score of 0.8159 with running time of 20,571 seconds (5.7 hours). These results indicate that protein-protein interaction can be predicted from domain structure with reliable accuracy and acceptable running time.
Abstract: The paper presents a one-dimensional transient
mathematical model of compressible thermal multi-component gas
mixture flows in pipes. The set of the mass, momentum and enthalpy
conservation equations for gas phase is solved. Thermo-physical
properties of multi-component gas mixture are calculated by solving
the Equation of State (EOS) model. The Soave-Redlich-Kwong
(SRK-EOS) model is chosen. Gas mixture viscosity is calculated on
the basis of the Lee-Gonzales-Eakin (LGE) correlation. Numerical
analysis on rapid decompression in conventional dry gases is
performed by using the proposed mathematical model. The model is
validated on measured values of the decompression wave speed in
dry natural gas mixtures. All predictions show excellent agreement
with the experimental data at high and low pressure. The presented
model predicts the decompression in dry natural gas mixtures much
better than GASDECOM and OLGA codes, which are the most
frequently-used codes in oil and gas pipeline transport service.
Abstract: The research object was apple-black currant
marmalade candies. Experiments were carried out at the Faculty of
Food Technology of the Latvia University of Agriculture. An active
packaging in combination with modified atmosphere (MAP, CO2
100%) was examined and compared with traditional packaging in air
ambiance. Polymer Multibarrier 60 and paper bags were used.
Influence of iron based oxygen absorber in sachets of 500 cc
obtained from Mitsubishi Gas Chemical Europe Ageless® was tested
on the quality during the shelf of marmalade. Samples of 80±5 g
were packaged in polymer pouches (110 mm x 110 mm),
hermetically sealed by MULTIVAC C300 vacuum chamber machine,
and stored in room temperature +20.0±1.0 °C. The physiochemical
properties – weight losses, moisture content, hardness, aw, pH, colour,
changes of atmosphere content (CO2 and O2) in headspace of packs,
and microbial conditions were analysed before packaging and in the
1st, 3rd , 5th, 8th, 11th and 15th weeks of storage.
Abstract: Spherical shaped magnetite (Fe3O4) and Au@Fe3O4
nanoparticles were successfully synthesized from Fe electrodes
immersed in water with CTAB surfactant and HAuCl4 solution using
simple method-pulsed plasma in liquid, without the use of dopants or
special conditions for stabilization. Vibrating sample magnetometer
indicated ferromagnetic behavior of particles at room temperature with
coercivity and saturation magnetization of (Hc=105 Oe, Ms=6.83
emu/g) for Fe3O4 and (Hc=175, Ms=3.56emu/g) for Au@Fe3O4
nanoparticles. Structure and morphology of nanoparticles were
characterized by X-ray Diffraction analysis and HR-TEM
measurements. The cytotoxicity of nanoparticles was indicated using a
XTT assay to be very low (cell viability: 98-89% with Fe3O4 and
99-91% for Au@Fe3O4 NPs).
Abstract: Physical and mechanical properties of Russian olive
fruits were measured at moisture content of 14.43% w.b. The results
revealed that the mean length, width and thickness of Russian olive
fruits were 20.72, 15.73 and 14.69mm, respectively. Mean mass and
volume of Russian olive fruits were measured as 1.45 g and 2.55 cm3,
respectively. The sphericity, aspect ratio and surface area were
calculated as 0.81, 0.72 and 8.96 cm2, respectively, while arithmetic
mean diameter, geometric mean diameter and equivalent diameter of
Russian olive fruits were 17.05, 16.83 and 16.84 mm, respectively.
Whole fruit density, bulk density and porosity of jujube fruits were
measured and found to be 1.01 g/cm3, 0.29 g/cm3 and 69.5%,
respectively. The values of static coefficient of friction on three
surfaces of glass, galvanized iron and plywood were 0.35, 0.36 and
0.43, respectively. The skin color (L*, a*, b*) varied from 9.92 to
16.08; 2.04 to 3.91 and 1.12 to 3.83, respectively. The values of
rupture force, deformation, energy absorbed and hardness were found
to be between 12.14-16.85 N, 2.16-4.25 mm, 3.42-6.99 N mm and
17.1-23.85 N/mm.
Abstract: The optimization problem using time scales is studied.
Time scale is a model of time. The language of time scales seems to
be an ideal tool to unify the continuous-time and the discrete-time
theories. In this work we present necessary conditions for a solution
of an optimization problem on time scales. To obtain that result we
use properties and results of the partial diamond-alpha derivatives for
continuous-multivariable functions. These results are also presented
here.
Abstract: The γ-turns play important roles in protein folding and
molecular recognition. The prediction and analysis of γ-turn types are
important for both protein structure predictions and better
understanding the characteristics of different γ-turn types. This study
proposed a physicochemical property-based decision tree (PPDT)
method to interpretably predict γ-turn types. In addition to the good
prediction performance of PPDT, three simple and human
interpretable IF-THEN rules are extracted from the decision tree
constructed by PPDT. The identified informative physicochemical
properties and concise rules provide a simple way for discriminating
and understanding γ-turn types.
Abstract: According to FDA (Food and Drug Administration of the United States), vinegar is definedas a sour liquid containing at least 4 grams acetic acid in 100 cubic centimeter (4% solution of acetic acid) of solution that is produced from sugary materials by alcoholic fermentation. In the base of microbial starters, vinegars could be contained of more than 50 types of volatile and aromatic substances that responsible for their sweet taste and smelling. Recently the vinegar industry has a great proportion in agriculture, food and microbial biotechnology. The acetic acid bacteria are from the family Acetobacteraceae. Regarding to the latest version of Bergy-s Mannual of Systematic Bacteriology that has categorized bacteria in the base of their 16s RNA differences, the most important acetic acid genera are included Acetobacter (genus I), Gluconacetobacter (genus VIII) and Gluconobacter (genus IX). The genus Acetobacter that is primarily used in vinegar manufacturing plants is a gram negative, obligate aerobe coccus or rod shaped bacterium with the size 0.6 - 0.8 X 1.0 - 4.0 μm, nonmotile or motile with peritrichous flagella and catalase positive – oxidase negative biochemically. Some strains are overoxidizer that could convert acetic acid to carbon dioxide and water.In this research one Acetobacter native strain with high acetic acid productivity was isolated from Iranian white – red cherry. We used two specific culture media include Carr medium [yeast extract, 3%; ethanol, 2% (v/v); bromocresol green, 0.002%; agar, 2% and distilled water, 1000 ml], Frateur medium [yeast extract, 10 g/l; CaCO3, 20 g/l; ethanol, 20 g/l; agar, 20 g/l and distilled water, 1000 ml] and an industrial culture medium. In addition to high acetic acid production and high growth rate, this strain had a good tolerance against ethanol concentration that was examined using modified Carr media with 5%, 7% and 9% ethanol concentrations. While the industrial strains of acetic acid bacteria grow in the thermal range of 28 – 30 °C, this strain was adapted for growth in 34 – 36 °C after 96 hours incubation period. These dramatic characteristics suggest a potential biotechnological strain in production of cherry vinegar with a sweet smell and different nutritional properties in comparison to recent vinegar types. The lack of growth after 24, 48 and 72 hours incubation at 34 – 36 °C and the growth after 96 hours indicates a good and fast thermal flexibility of this strain as a significant characteristic of biotechnological and industrial strains.
Abstract: This paper describes the study of cryptographic hash functions, one of the most important classes of primitives used in recent techniques in cryptography. The main aim is the development of recent crypt analysis hash function. We present different approaches to defining security properties more formally and present basic attack on hash function. We recall Merkle-Damgard security properties of iterated hash function. The Main aim of this paper is the development of recent techniques applicable to crypt Analysis hash function, mainly from SHA family. Recent proposed attacks an MD5 & SHA motivate a new hash function design. It is designed not only to have higher security but also to be faster than SHA-256. The performance of the new hash function is at least 30% better than that of SHA-256 in software. And it is secure against any known cryptographic attacks on hash functions.
Abstract: Recently, bianisotropic media again received
increasing importance in electromagnetic theory because of advances
in material science which enable the manufacturing of complex
bianisotropic materials. By using Maxwell's equations and
corresponding boundary conditions, the electromagnetic field
distribution in bianisotropic solenoid coils is determined and the
influence of the bianisotropic behaviour of coil to the impedance and
Q-factor is considered. Bianisotropic media are the largest class of
linear media which is able to describe the macroscopic material
properties of artificial dielectrics, artificial magnetics, artificial chiral
materials, left-handed materials, metamaterials, and other composite
materials. Several special cases of coils, filled with complex
substance, have been analyzed. Results obtained by using the
analytical approach are compared with values calculated by
numerical methods, especially by our new hybrid EEM/BEM method
and FEM.
Abstract: In this paper, the notion of Hyperbolic Klingenberg
plane is introduced via a set of axioms like as Affine Klingenberg
planes and Projective Klingenberg planes. Models of such planes are
constructed by deleting a certain number m of equivalence classes
of lines from a Projective Klingenberg plane. In the finite case, an
upper bound for m is established and some combinatoric properties
are investigated.
Abstract: The fortified of soft wheat flour with cowpea flour in
bread making was investigated. The Soft wheat flour (SWF) was
substituted by cowpea flour at levels of 5, 15 and 20%. The protein content of composite breads ranged from 6.1 – 9.9%. Significant
difference was observed in moisture, protein and crude fibre contents of control (wheat bread) and composite bread at 5% addition of
cowpea. Water absorption capacities of composite flours increased with increasing levels of cowpea flour in the blend. The specific loaf
volume decreased significantly with increased cowpea content of
blends. The overall acceptability of the 5% cowpea flour content of
composite bread was not significantly different from the control (Soft Wheat-bread) but there is significantly different with increasing the
levels of cowpea flour in the blend more than 5%.
Abstract: Brick is one of the most common masonry units used as building material. Due to the demand, different types of waste have been investigated to be incorporated into the bricks. Many types of sludge have been incorporated in fired clay brick for example marble sludge, stone sludge, water sludge, sewage sludge, and ceramic sludge. The utilization of these waste materials in fired clay bricks usually has positive effects on the properties such as lightweight bricks with improved shrinkage, porosity, and strength. This paper reviews on utilization of different types of sludge wastes into fired clay bricks. Previous investigations have demonstrated positive effects on the physical and mechanical properties as well as less impact towards the environment. Thus, the utilizations of sludge waste could produce a good quality of brick and could be one of alternative disposal methods for the sludge wastes.
Abstract: We introduce the notion of commuting regular Γ-
semiring and discuss some properties of commuting regular Γ-
semiring. We also obtain a necessary and sufficient condition for
Γ-semiring to possess commuting regularity.
Abstract: Base on extenics theory, the statistical physical and mechanical properties from laboratory experiments are used to evaluate the bearing capacity of lateritic soil foundation. The properties include water content, bulk density, liquid limit, cohesion, and so on. The matter-element and the dependent function are defined. Then the synthesis dependent degree and the final grade index are calculated. The results show that predicted outcomes can be matched with the in-situ test data, and a evaluate grade associate with bearing capacity can be deduced. The results provide guidance to assess and determine the bearing capacity grade of lateritic soil foundation.
Abstract: The study analyzed the risk and returns of commercial-property in Southwestern Nigeria and selected stocksmarket investment between 2000 and 2009; compared the inflation hedging characteristics and diversification potentials of investing in commercial-property and selected stock- market investment. Primary data were collected on characteristics, rental and capital values of commercial- properties from their property managers through the use of questionnaire. Secondary data on stock prices and dividends on banking, insurance and conglomerates sectors were sourced from the Nigerian Stock Exchange (2000-2009). The result showed that average return on all the selected stock- investments was higher than that of commercial-property. As regards risk, commercial-property indicated lower risk, compared to stocks. Also the stock-investment had better inflation hedging capacity than commercial-properties; combination of both had diversification potentials. The study concluded that stock-market investment offered attractive higher return than commercial-property although with higher risk and there could be diversification benefits in combining commercial-property with stock- investment.
Abstract: Natural gas flow contains undesirable solid particles,
liquid condensation, and/or oil droplets and requires reliable
removing equipment to perform filtration. Recent natural gas
processing applications are demanded compactness and reliability of
process equipment. Since conventional means are sophisticated in
design, poor in efficiency, and continue lacking robust, a supersonic
nozzle has been introduced as an alternative means to meet such
demands.
A 3-D Convergent-Divergent Nozzle is simulated using
commercial Code for pressure ratio (NPR) varies from 1.2 to 2. Six
different shapes of nozzle are numerically examined to illustrate the
position of shock-wave as such spot could be considered as a
benchmark of particle separation. Rectangle, triangle, circular,
elliptical, pentagon, and hexagon nozzles are simulated using Fluent
Code with all have same cross-sectional area.
The simple one-dimensional inviscid theory does not describe the
actual features of fluid flow precisely as it ignores the impact of
nozzle configuration on the flow properties. CFD Simulation results,
however, show that nozzle geometry influences the flow structures
including location of shock wave.
The CFD analysis predicts shock appearance when p01/pa>1.2 for
almost all geometry and locates at the lower area ratio (Ae/At).
Simulation results showed that shock wave in Elliptical nozzle has
the farthest distance from the throat among the others at relatively
small NPR. As NPR increases, hexagon would be the farthest. The
numerical result is compared with available experimental data and
has shown good agreement in terms of shock location and flow
structure.
Abstract: This paper deals with rheological behavior of tomato
paste from the view point of time independent properties inclusive of
processing variables such as sample temperature which influence on
rheological properties as well as breaking temperature and
concentration which beside the rheological properties, influence on
the quality of final product. With this aim 10 tomato paste samples at
various concentrations (17-25%) and breaking temperatures (65-
85 C o ) have been produced. The experimental results showed tomato
paste behaves as a non-Newtonian semi-fluid which follows power
law model that consistency coefficient (K) is supposed function of
breaking temperature, concentration and sample temperature with
consideration to superimpose function.
Abstract: In the present study, a steady-state simulation model
has been developed to evaluate the system performance of a
transcritical carbon dioxide heat pump system for simultaneous water
cooling and heating. Both the evaporator (including both two-phase
and superheated zone) and gas cooler models consider the highly
variable heat transfer characteristics of CO2 and pressure drop. The
numerical simulation model of transcritical CO2 heat pump has been
validated by test data obtained from experiments on the heat pump
prototype. Comparison between the test results and the model
prediction for system COP variation with compressor discharge
pressure shows a modest agreement with a maximum deviation of
15% and the trends are fairly similar. Comparison for other operating
parameters also shows fairly similar deviation between the test
results and the model prediction. Finally, the simulation results are
presented to study the effects of operating parameters such as,
temperature of heat exchanger fluid at the inlet, discharge pressure,
compressor speed on system performance of CO2 heat pump, suitable
in a dairy plant where simultaneous cooling at 4oC and heating at
73oC are required. Results show that good heat transfer properties of
CO2 for both two-phase and supercritical region and efficient
compression process contribute a lot for high system COPs.
Abstract: The most reliable and accurate description of the actual behavior of a software system is its source code. However, not all questions about the system can be answered directly by resorting to this repository of information. What the reverse engineering methodology aims at is the extraction of abstract, goal-oriented “views" of the system, able to summarize relevant properties of the computation performed by the program. While concentrating on reverse engineering we had modeled the C++ files by designing the translator.