Abstract: The size, complexity and number of databases used
for protein information have caused bioinformatics to lag behind in
adapting to the need to handle this distributed information.
Integrating all the information from different databases into one
database is a challenging problem. Our main research is to develop a
tool which can be used to access and manipulate protein information
from difference databases. In our approach, we have integrated
difference databases such as Swiss-prot, PDB, Interpro, and EMBL
and transformed these databases in flat file format into relational
form using XML and Bioperl. As a result, we showed this tool can
search different sizes of protein information stored in relational
database and the result can be retrieved faster compared to flat file
database. A web based user interface is provided to allow user to
access or search for protein information in the local database.
Abstract: Particle Swarm Optimization (PSO) with elite PSO
parameters has been developed for power flow analysis under
practical constrained situations. Multiple solutions of the power flow
problem are useful in voltage stability assessment of power system.
A method of determination of multiple power flow solutions is
presented using a hybrid of Particle Swarm Optimization (PSO) and
local search technique. The unique and innovative learning factors of
the PSO algorithm are formulated depending upon the node power
mismatch values to be highly adaptive with the power flow problems.
The local search is applied on the pbest solution obtained by the PSO
algorithm in each iteration. The proposed algorithm performs reliably
and provides multiple solutions when applied on standard and illconditioned
systems. The test results show that the performances of
the proposed algorithm under critical conditions are better than the
conventional methods.
Abstract: An optimal power flow (OPF) based on particle swarm
optimization (PSO) was developed with more realistic generator
security constraint using the capability curve instead of only Pmin/Pmax
and Qmin/Qmax. Neural network (NN) was used in designing digital
capability curve and the security check algorithm. The algorithm is
very simple and flexible especially for representing non linear
generation operation limit near steady state stability limit and under
excitation operation area. In effort to avoid local optimal power flow
solution, the particle swarm optimization was implemented with
enough widespread initial population. The objective function used in
the optimization process is electric production cost which is
dominated by fuel cost. The proposed method was implemented at
Java Bali 500 kV power systems contain of 7 generators and 20
buses. The simulation result shows that the combination of generator
power output resulted from the proposed method was more economic
compared with the result using conventional constraint but operated
at more marginal operating point.
Abstract: This paper presents a new sensor-based online method for generating collision-free near-optimal paths for mobile robots pursuing a moving target amidst dynamic and static obstacles. At each iteration, first the set of all collision-free directions are calculated using velocity vectors of the robot relative to each obstacle and target, forming the Directive Circle (DC), which is a novel concept. Then, a direction close to the shortest path to the target is selected from feasible directions in DC. The DC prevents the robot from being trapped in deadlocks or local minima. It is assumed that the target's velocity is known, while the speeds of dynamic obstacles, as well as the locations of static obstacles, are to be calculated online. Extensive simulations and experimental results demonstrated the efficiency of the proposed method and its success in coping with complex environments and obstacles.
Abstract: A systems approach model for prostate cancer in prostate duct, as a sub-system of the organism is developed. It is accomplished in two steps. First this research work starts with a nonlinear system of coupled Fokker-Plank equations which models continuous process of the system like motion of cells. Then extended to PDEs that include discontinuous processes like cell mutations, proliferation and deaths. The discontinuous processes is modeled by using intensity poisson processes. The model incorporates the features of the prostate duct. The system of PDEs spatial coordinate is along the proximal distal axis. Its parameters depend on features of the prostate duct. The movement of cells is biased towards distal region and mutations of prostate cancer cells is localized in the proximal region. Numerical solutions of the full system of equations are provided, and are exhibit traveling wave fronts phenomena. This motivates the use of the standard transformation to derive a canonically related system of ODEs for traveling wave solutions. The results obtained show persistence of prostate cancer by showing that the non-negative cone for the traveling wave system is time invariant. The traveling waves have a unique global attractor is proved also. Biologically, the global attractor verifies that evolution of prostate cancer stem cells exhibit the avascular tumor growth. These numerical solutions show that altering prostate stem cell movement or mutation of prostate cancer cells lead to avascular tumor. Conclusion with comments on clinical implications of the model is discussed.
Abstract: Rice, which is the staple food in Sierra Leone, is
consumed on a daily basis. It is the most imperative food crop
extensively grown by farmers across all ecologies in the country.
Though much attention is now given to rice grain production through
the small holder commercialization programme (SHCP), however, no
attention has been given in investigating the limitations faced by rice
producers. This paper will contribute to attempts to overcome the
development challenges caused by food insecurity. The objective of
this paper is thus, to analysis the relationship between rice production
and the domestic retail price of rice. The study employed a log linear
model in which, the quantity of rice produced is the dependent
variable, quantity of rice imported, price of imported rice and price of
domestic rice as explanatory variables. Findings showed that, locally
produced rice is even more expensive than the imported rice per ton,
and almost all the inhabitants in the capital city which hosts about
65% of the entire population of the country favor imported rice, as it
is free from stones with other impurities. On the other hand, to
control price and simultaneously increase rice production, the
government should purchase the rice from the farmers and then sell to private retailers.
Abstract: It-s known that incorporating prior knowledge into support
vector regression (SVR) can help to improve the approximation
performance. Most of researches are concerned with the incorporation
of knowledge in the form of numerical relationships. Little work,
however, has been done to incorporate the prior knowledge on the
structural relationships among the variables (referred as to Structural
Prior Knowledge, SPK). This paper explores the incorporation of SPK
in SVR by constructing appropriate admissible support vector kernel
(SV kernel) based on the properties of reproducing kernel (R.K).
Three-levels specifications of SPK are studied with the corresponding
sub-levels of prior knowledge that can be considered for the method.
These include Hierarchical SPK (HSPK), Interactional SPK (ISPK)
consisting of independence, global and local interaction, Functional
SPK (FSPK) composed of exterior-FSPK and interior-FSPK. A
convenient tool for describing the SPK, namely Description Matrix
of SPK is introduced. Subsequently, a new SVR, namely Motivated
Support Vector Regression (MSVR) whose structure is motivated
in part by SPK, is proposed. Synthetic examples show that it is
possible to incorporate a wide variety of SPK and helpful to improve
the approximation performance in complex cases. The benefits of
MSVR are finally shown on a real-life military application, Air-toground
battle simulation, which shows great potential for MSVR to
the complex military applications.
Abstract: The present models and simulation algorithms of intracellular stochastic kinetics are usually based on the premise that diffusion is so fast that the concentrations of all the involved species are homogeneous in space. However, recents experimental measurements of intracellular diffusion constants indicate that the assumption of a homogeneous well-stirred cytosol is not necessarily valid even for small prokaryotic cells. In this work a mathematical treatment of diffusion that can be incorporated in a stochastic algorithm simulating the dynamics of a reaction-diffusion system is presented. The movement of a molecule A from a region i to a region j of the space is represented as a first order reaction Ai k- ! Aj , where the rate constant k depends on the diffusion coefficient. The diffusion coefficients are modeled as function of the local concentration of the solutes, their intrinsic viscosities, their frictional coefficients and the temperature of the system. The stochastic time evolution of the system is given by the occurrence of diffusion events and chemical reaction events. At each time step an event (reaction or diffusion) is selected from a probability distribution of waiting times determined by the intrinsic reaction kinetics and diffusion dynamics. To demonstrate the method the simulation results of the reaction-diffusion system of chaperoneassisted protein folding in cytoplasm are shown.
Abstract: Camera calibration is an indispensable step for augmented
reality or image guided applications where quantitative information
should be derived from the images. Usually, a camera
calibration is obtained by taking images of a special calibration object
and extracting the image coordinates of projected calibration marks
enabling the calculation of the projection from the 3d world coordinates
to the 2d image coordinates. Thus such a procedure exhibits
typical steps, including feature point localization in the acquired
images, camera model fitting, correction of distortion introduced by
the optics and finally an optimization of the model-s parameters. In
this paper we propose to extend this list by further step concerning
the identification of the optimal subset of images yielding the smallest
overall calibration error. For this, we present a Monte Carlo based
algorithm along with a deterministic extension that automatically
determines the images yielding an optimal calibration. Finally, we
present results proving that the calibration can be significantly
improved by automated image selection.
Abstract: Using mini modules of Tmotes, it is possible to automate a small personal area network. This idea can be extended to large networks too by implementing multi-hop routing. Linking the various Tmotes using Programming languages like Nesc, Java and having transmitter and receiver sections, a network can be monitored. It is foreseen that, depending on the application, a long range at a low data transfer rate or average throughput may be an acceptable trade-off. To reduce the overall costs involved, an optimum number of Tmotes to be used under various conditions (Indoor/Outdoor) is to be deduced. By analyzing the data rates or throughputs at various locations of Tmotes, it is possible to deduce an optimal number of Tmotes for a specific network. This paper deals with the determination of optimum distances to reduce the cost and increase the reliability of the entire sensor network with Wireless Local Loop (WLL) capability.
Abstract: In this paper we present a method for gene ranking
from DNA microarray data. More precisely, we calculate the correlation
networks, which are unweighted and undirected graphs, from
microarray data of cervical cancer whereas each network represents
a tissue of a certain tumor stage and each node in the network
represents a gene. From these networks we extract one tree for
each gene by a local decomposition of the correlation network. The
interpretation of a tree is that it represents the n-nearest neighbor
genes on the n-th level of a tree, measured by the Dijkstra distance,
and, hence, gives the local embedding of a gene within the correlation
network. For the obtained trees we measure the pairwise similarity
between trees rooted by the same gene from normal to cancerous
tissues. This evaluates the modification of the tree topology due to
progression of the tumor. Finally, we rank the obtained similarity
values from all tissue comparisons and select the top ranked genes.
For these genes the local neighborhood in the correlation networks
changes most between normal and cancerous tissues. As a result
we find that the top ranked genes are candidates suspected to be
involved in tumor growth and, hence, indicates that our method
captures essential information from the underlying DNA microarray
data of cervical cancer.
Abstract: This research sought to discover the forms of
promotion and dissemination of traditional local wisdom that are
used to create occupations among the elderly at Noanmueng
Community, Muang Sub-District, Baan Doong District, Udornthani
Province. The criteria used to select the research sample group were:
having a role involved in the promotion and dissemination of
traditional local wisdom to create occupations among the elderly;
being an experienced person who the residents of Noanmueng
Community find trustworthy; and having lived in Noanmueng
Community for a long time so as to be able to see the development
and change that occurs. A total of 16 persons were thus selected. Data
was gathered through a qualitative study, using semi-structured indepth
interviews. The collected data was then summarized and
discussed according to the research objectives. Finally, the data was
presented in narrative format. Results found that the identifying
traditional local wisdom of the community (which grew from the
residents’ experience and beneficial usage in daily life, passed down
from generation to generation) was the weaving of cloth and
basketry. As for the manner of promotion and dissemination of
traditional local wisdom, these skills were passed down through
teaching by example to family members, relatives and others in the
community. This was largely the initiative of the elders or elderly
members of the community. In order for the promotion and
dissemination of traditional local wisdom to create occupations
among the elderly, the traditional local wisdom should be supported
in every way through participation of the community members. For
example, establish a museum of traditional local wisdom for the
collection of traditional local wisdom in various fields, both from the
past and present innovations. This would be a source of pride for the
community, simultaneously helping traditional local wisdom to
become widely known and to create income for the community’s
elderly. Additional ways include organizing exhibitions of products
made by traditional local wisdom, finding both domestic and
international markets, as well as building both domestic and
international networks aiming to find opportunities to market
products made by traditional local wisdom.
Abstract: Studies in neuroscience suggest that both global and
local feature information are crucial for perception and recognition of
faces. It is widely believed that local feature is less sensitive to
variations caused by illumination, expression and illumination. In
this paper, we target at designing and learning local features for face
recognition. We designed three types of local features. They are
semi-global feature, local patch feature and tangent shape feature.
The designing of semi-global feature aims at taking advantage of
global-like feature and meanwhile avoiding suppressing AdaBoost
algorithm in boosting weak classifies established from small local
patches. The designing of local patch feature targets at automatically
selecting discriminative features, and is thus different with traditional
ways, in which local patches are usually selected manually to cover
the salient facial components. Also, shape feature is considered in
this paper for frontal view face recognition. These features are
selected and combined under the framework of boosting algorithm
and cascade structure. The experimental results demonstrate that the
proposed approach outperforms the standard eigenface method and
Bayesian method. Moreover, the selected local features and
observations in the experiments are enlightening to researches in
local feature design in face recognition.
Abstract: This paper presents a novel two-phase hybrid optimization algorithm with hybrid genetic operators to solve the optimal control problem of a single stage hybrid manufacturing system. The proposed hybrid real coded genetic algorithm (HRCGA) is developed in such a way that a simple real coded GA acts as a base level search, which makes a quick decision to direct the search towards the optimal region, and a local search method is next employed to do fine tuning. The hybrid genetic operators involved in the proposed algorithm improve both the quality of the solution and convergence speed. The phase–1 uses conventional real coded genetic algorithm (RCGA), while optimisation by direct search and systematic reduction of the size of search region is employed in the phase – 2. A typical numerical example of an optimal control problem with the number of jobs varying from 10 to 50 is included to illustrate the efficacy of the proposed algorithm. Several statistical analyses are done to compare the validity of the proposed algorithm with the conventional RCGA and PSO techniques. Hypothesis t – test and analysis of variance (ANOVA) test are also carried out to validate the effectiveness of the proposed algorithm. The results clearly demonstrate that the proposed algorithm not only improves the quality but also is more efficient in converging to the optimal value faster. They can outperform the conventional real coded GA (RCGA) and the efficient particle swarm optimisation (PSO) algorithm in quality of the optimal solution and also in terms of convergence to the actual optimum value.
Abstract: In this paper an effective approach for segmenting
human skin regions in images taken at different environment is
proposed. The proposed method uses a color distance map that is
flexible enough to reliably detect the skin regions even if the
illumination conditions of the image vary. Local image conditions is
also focused, which help the technique to adaptively detect differently
illuminated skin regions of an image. Moreover, usage of local
information also helps the skin detection process to get rid of picking
up much noisy pixels.
Abstract: Dengue fever is an important human arboviral disease. Outbreaks are now reported quite often from many parts of the world. The number of cases involving pregnant women and infant cases are increasing every year. The illness is often severe and complications may occur. Deaths often occur because of the difficulties in early diagnosis and in the improper management of the diseases. Dengue antibodies from pregnant women are passed on to infants and this protects the infants from dengue infections. Antibodies from the mother are transferred to the fetus when it is still in the womb. In this study, we formulate a mathematical model to describe the transmission of this disease in pregnant women. The model is formulated by dividing the human population into pregnant women and non-pregnant human (men and non-pregnant women). Each class is subdivided into susceptible (S), infectious (I) and recovered (R) subclasses. We apply standard dynamical analysis to our model. Conditions for the local stability of the equilibrium points are given. The numerical simulations are shown. The bifurcation diagrams of our model are discussed. The control of this disease in pregnant women is discussed in terms of the threshold conditions.
Abstract: The objectives of this research were 1) to study the
opinions of newspaper journalists about their trustworthiness in the
National Press Council of Thailand (NPCT) and the NPCT-s success
in regulating the professional ethics; and 2) to study the differences
among mean vectors of the variables of trustworthiness in the NPCT
and opinions on the NPCT-s success in regulating professional ethics
among samples working at different work positions and from
different affiliation of newspaper organizations. The results showed
that 1) Interaction effects between the variables of work positions and
affiliation were not statistically significant at the confidence level of
0.05. 2) There was a statistically significant difference (p
Abstract: The study explored the question of who am I? As a (re)construction of cultural identity by delving into globalization, communication, and social change in Malta during a historical moment when Malta became a European Union Member State. Three objectives guided this qualitative study. Firstly the study reviewed European Union (EU) policies that regulate broadcasting and their implementation in Member States, whilst meeting the challenges of globalization and new media technology. Secondly the research investigated the changes of the media landscape via organizational structures, programs and television (TV) content. Finally the study explored the impact of these transformations taking place in the way Maltese live as they (re)construct their cultural identity. Despite the choices available to the Maltese audience, old local traditions and new foreign customs coexist as informants continue to (re)construct their cultural identity and define who they are.
Abstract: The Taiwan government has started to promote the “Plain Landscape Afforestation and Greening Program" since 2002. A key task of the program was the payment for environmental services (PES), entitled the “Plain Landscape Afforestation Policy" (PLAP), which was certificated by the Executive Yuan on August 31, 2001 and enacted on January 1, 2002. According to the policy, it is estimated that the total area of afforestation will be 25,100 hectares by December 31, 2007. Until the end of 2007, the policy had been enacted for six years in total and the actual area of afforestation was 8,919.18 hectares. Among them, Taiwan Sugar Corporation (TSC) was accounted for 7,960 hectares (with 2,450.83 hectares as public service area) which occupied 86.22% of the total afforestation area; the private farmland promoted by local governments was accounted for 869.18 hectares which occupied 9.75% of the total afforestation area. Based on the above, we observe that most of the afforestation area in this policy is executed by TSC, and the achievement ratio by TSC is better than by others. It implies that the success of the PLAP is seriously related to the execution of TSC. The objective of this study is to analyze the relevant policy planning of TSC-s participation in the PLAP, suggest complementary measures, and draw up effective adjustment mechanisms, so as to improve the effectiveness of executing the policy. Our main conclusions and suggestions are summarized as follows: 1. The main reason for TSC-s participation in the PLAP is based on their passive cooperation with the central government or company policy. Prior to TSC-s participation in the PLAP, their lands were mainly used for growing sugarcane. 2. The main factors of TSC-s consideration on the selection of tree species are based on the suitability of land and species. The largest proportion of tree species is allocated to economic forests, and the lack of technical instruction was the main problem during afforestation. Moreover, the method of improving TSC-s future development in leisure agriculture and landscape business becomes a key topic. 3. TSC has developed short and long-term plans on participating in the PLAP for the future. However, there is no great willingness or incentive on budgeting for such detailed planning. 4. Most people from TSC interviewed consider the requirements on PLAP unreasonable. Among them, an unreasonable requirement on the number of trees accounted for the greatest proportion; furthermore, most interviewees suggested that the government should continue to provide incentives even after 20 years. 5. Since the government shares the same goals as TSC, there should be sufficient cooperation and communication that support the technical instruction and reduction of afforestation cost, which will also help to improve effectiveness of the policy.
Abstract: The microbiological and physicochemical
characteristics of wetland soils in Eket Local Government Area were
studied between May 2001 and June 2003. Total heterotrophic
bacterial counts (THBC), total fungal counts (TFC), and total
actinomycetes counts (TAC) were determined from soil samples
taken from four locations at two depths in the wet and dry seasons.
Microbial isolates were characterized and identified. Particle size and
chemical parameters were also determined using standard methods.
THBC ranged from 5.2 (+0.17) x106 to 1.7 (+0.18) x107 cfu/g and
from 2.4 (+0.02) x106 to 1.4 (+0.04) x107cfu/g in the wet and dry
seasons, respectively. TFC ranged from 1.8 (+0.03) x106 to 6.6 (+
0.18) x106 cfu/g and from 1.0 (+0.04) x106 to 4.2 (+ 0.01) x106 cfu/g
in the wet and dry seasons, respectively .TAC ranged from 1.2
(+0.53) x106 to 6.0 (+0.05) x106 cfu/g and from 0.6 (+0.01) x106 to
3.2 (+ 0.12) x106 cfu/g in the wet and dry season, respectively.
Acinetobacter, Alcaligenes, Arthrobacter, Bacillus, Beijerinckja,
Enterobacter, Micrococcus, Flavobacterium, Serratia, Enterococcus,
and Pseudomonas species were predominant bacteria while
Aspergillus, Fusarium, Mucor, Penicillium, and Rhizopus were the
dominant fungal genera isolated. Streptomyces and Norcadia were
the actinomycetes genera isolated. The particle size analysis showed
high sand fraction but low silt and clay. The pH and % organic
matter were generally acidic and low, respectively at all locations.
Calcium dominated the exchangeable bases with low electrical
conductivity and micronutrients. These results provide the baseline
data of Eket wetland soils for its management for sustainable
agriculture.