Abstract: Proteomics is one of the largest areas of research for
bioinformatics and medical science. An ambitious goal of proteomics
is to elucidate the structure, interactions and functions of all proteins
within cells and organisms. Predicting Protein-Protein Interaction
(PPI) is one of the crucial and decisive problems in current research.
Genomic data offer a great opportunity and at the same time a lot of
challenges for the identification of these interactions. Many methods
have already been proposed in this regard. In case of in-silico
identification, most of the methods require both positive and negative
examples of protein interaction and the perfection of these examples
are very much crucial for the final prediction accuracy. Positive
examples are relatively easy to obtain from well known databases. But
the generation of negative examples is not a trivial task. Current PPI
identification methods generate negative examples based on some
assumptions, which are likely to affect their prediction accuracy.
Hence, if more reliable negative examples are used, the PPI prediction
methods may achieve even more accuracy. Focusing on this issue, a
graph based negative example generation method is proposed, which
is simple and more accurate than the existing approaches. An
interaction graph of the protein sequences is created. The basic
assumption is that the longer the shortest path between two
protein-sequences in the interaction graph, the less is the possibility of
their interaction. A well established PPI detection algorithm is
employed with our negative examples and in most cases it increases
the accuracy more than 10% in comparison with the negative pair
selection method in that paper.
Abstract: The communication networks development and
advancement during two last decades has been toward a single goal
and that is gradual change from circuit-switched networks to packed
switched ones. Today a lot of networks operates are trying to
transform the public telephone networks to multipurpose packed
switch. This new achievement is generally called "next generation
networks". In fact, the next generation networks enable the operators
to transfer every kind of services (sound, data and video) on a
network. First, in this report the definition, characteristics and next
generation networks services and then ad-hoc networks role in the
next generation networks are studied.
Abstract: This paper presents a supervised clustering algorithm,
namely Grid-Based Supervised Clustering (GBSC), which is able to
identify clusters of any shapes and sizes without presuming any
canonical form for data distribution. The GBSC needs no prespecified
number of clusters, is insensitive to the order of the input
data objects, and is capable of handling outliers. Built on the
combination of grid-based clustering and density-based clustering,
under the assistance of the downward closure property of density
used in bottom-up subspace clustering, the GBSC can notably reduce
its search space to avoid the memory confinement situation during its
execution. On two-dimension synthetic datasets, the GBSC can
identify clusters with different shapes and sizes correctly. The GBSC
also outperforms other five supervised clustering algorithms when
the experiments are performed on some UCI datasets.
Abstract: A reduced order modeling approach for natural
gas transient flow in pipelines is presented. The Euler
equations are considered as the governing equations and
solved numerically using the implicit Steger-Warming flux
vector splitting method. Next, the linearized form of the
equations is derived and the corresponding eigensystem is
obtained. Then, a few dominant flow eigenmodes are used to
construct an efficient reduced-order model. A well-known test
case is presented to demonstrate the accuracy and the
computational efficiency of the proposed method. The results
obtained are in good agreement with those of the direct
numerical method and field data. Moreover, it is shown that
the present reduced-order model is more efficient than the
conventional numerical techniques for transient flow analysis
of natural gas in pipelines.
Abstract: An important step in three-dimensional reconstruction
and computer vision is camera calibration, whose objective is to
estimate the intrinsic and extrinsic parameters of each camera. In this
paper, two linear methods based on the different planes are given. In
both methods, the general plane is used to replace the calibration
object with very good precision. In the first method, after controlling
the camera to undergo five times- translation movements and taking
pictures of the orthogonal planes, a set of linear constraints of the
camera intrinsic parameters is then derived by means of homography
matrix. The second method is to get all camera parameters by taking
only one picture of a given radius circle. experiments on simulated
data and real images,indicate that our method is reasonable and is a
good supplement to camera calibration.
Abstract: The health record in the Electronic Health Record
(EHR) system is more sensitive than demographic. It raises the
important issue for the EHR requirement in privacy, security, audit
trail, patient access, and archiving and data retention. The studies
about the EHR system security are deficient. The aim of this study is to
build a security environment for the EHR system by Integrating the
Healthcare Enterprise (IHE) Audit Trail and Node Authentication
Security (ATNA) profile. The CDAs can be access in a secure EHR
environment.
Abstract: This paper presents the results of a preventive maintenance application-based study and modeling of failure rates in breakers of electrical distribution systems. This is a critical issue in the reliability assessment of a system. In the analysis conducted in this paper, the impacts of failure rate variations caused by a preventive maintenance are examined. This is considered as a part of a Reliability Centered Maintenance (RCM) application program. A number of load point reliability indices is derived using the mathematical model of the failure rate, which is established using the observed data in a distribution system.
Abstract: A digital system is proposed for low power 100-
channel neural recording system in this paper, which consists of 100
amplifiers, 100 analog-to-digital converters (ADC), digital controller
and baseband, transceiver for data link and RF command link. The
proposed system is designed in a 0.18 μm CMOS process and 65 nm
CMOS process.
Abstract: A Matlab based software for logistic regression is developed to enhance the process of teaching quantitative topics and assist researchers with analyzing wide area of applications where categorical data is involved. The software offers an option of performing stepwise logistic regression to select the most significant predictors. The software includes a feature to detect influential observations in data, and investigates the effect of dropping or misclassifying an observation on a predictor variable. The input data may consist either as a set of individual responses (yes/no) with the predictor variables or as grouped records summarizing various categories for each unique set of predictor variables' values. Graphical displays are used to output various statistical results and to assess the goodness of fit of the logistic regression model. The software recognizes possible convergence constraints when present in data, and the user is notified accordingly.
Abstract: Among various HLM techniques, the Multivariate Hierarchical Linear Model (MHLM) is desirable to use, particularly when multivariate criterion variables are collected and the covariance structure has information valuable for data analysis. In order to reflect prior information or to obtain stable results when the sample size and the number of groups are not sufficiently large, the Bayes method has often been employed in hierarchical data analysis. In these cases, although the Markov Chain Monte Carlo (MCMC) method is a rather powerful tool for parameter estimation, Procedures regarding MCMC have not been formulated for MHLM. For this reason, this research presents concrete procedures for parameter estimation through the use of the Gibbs samplers. Lastly, several future topics for the use of MCMC approach for HLM is discussed.
Abstract: Safety Health and Environment Code of Practice (SHE
COP) was developed to help road transportation operators to manage
its operation in a systematic and safe manner. A study was conducted
to determine the effectiveness of SHE COP implementation during
non-OPS period. The objective of the study is to evaluate the
implementations of SHE COP among bus operators during wee hour
operations. The data was collected by completing a set of checklist
after observing the activities during pre departure, during the trip, and
upon arrival. The results show that there are seven widely practiced
SHE COP elements. 22% of the buses have average speed exceeding
the maximum permissible speed on the highways (90 km/h), with
13% of the buses were travelling at the speed of more than 100 km/h.
The statistical analysis shows that there is only one significant
association which relates speeding with prior presence of
enforcement officers.
Abstract: Numerical calculations of flow around a square cylinder are presented using the multi-relaxation-time lattice Boltzmann method at Reynolds number 150. The effects of upstream locations, downstream locations and blockage are investigated systematically. A detail analysis are given in terms of time-trace analysis of drag and lift coefficients, power spectra analysis of lift coefficient, vorticity contours visualizations and phase diagrams. A number of physical quantities mean drag coefficient, drag coefficient, Strouhal number and root-mean-square values of drag and lift coefficients are calculated and compared with the well resolved experimental data and numerical results available in open literature. The results had shown that the upstream, downstream and height of the computational domain are at least 7.5, 37.5 and 12 diameters of the cylinder, respectively.
Abstract: This study applied the Gaussian trajectory
transfer-coefficient model (GTx) to simulate the particulate matter
concentrations and the source apportionments at Nanzih Air Quality
Monitoring Station in southern Taiwan from November 2007 to
February 2008. The correlation coefficient between the observed and
the calculated daily PM10 concentrations is 0.5 and the absolute bias of
the PM10 concentrations is 24%. The simulated PM10 concentrations
matched well with the observed data. Although the emission rate of
PM10 was dominated by area sources (58%), the results of source
apportionments indicated that the primary sources for PM10 at Nanzih
Station were point sources (42%), area sources (20%) and then upwind
boundary concentration (14%). The obvious difference of PM10 source
apportionment between episode and non-episode days was upwind
boundary concentrations which contributed to 20% and 11% PM10
sources, respectively. The gas-particle conversion of secondary
aerosol and long range transport played crucial roles on the PM10
contribution to a receptor.
Abstract: This paper presents a mark-up approach to service creation in Next Generation Networks. The approach allows deriving added value from network functions exposed by Parlay/OSA (Open Service Access) interfaces. With OSA interfaces service logic scripts might be executed both on callrelated and call-unrelated events. To illustrate the approach XMLbased language constructions for data and method definitions, flow control, time measuring and supervision and database access are given and an example of OSA application is considered.
Abstract: This article deals with the conceptual modeling under uncertainty. First, the division of information systems with their definition will be described, focusing on those where the construction of a conceptual model is suitable for the design of future information system database. Furthermore, the disadvantages of the traditional approach in creating a conceptual model and database design will be analyzed. A comprehensive methodology for the creation of a conceptual model based on analysis of client requirements and the selection of a suitable domain model is proposed here. This article presents the expert system used for the construction of a conceptual model and is a suitable tool for database designers to create a conceptual model.
Abstract: The objective of this paper, is to apply support vector machine (SVM) approach for the classification of cancerous and normal regions of prostate images. Three kinds of textural features are extracted and used for the analysis: parameters of the Gauss- Markov random field (GMRF), correlation function and relative entropy. Prostate images are acquired by the system consisting of a microscope, video camera and a digitizing board. Cross-validated classification over a database of 46 images is implemented to evaluate the performance. In SVM classification, sensitivity and specificity of 96.2% and 97.0% are achieved for the 32x32 pixel block sized data, respectively, with an overall accuracy of 96.6%. Classification performance is compared with artificial neural network and k-nearest neighbor classifiers. Experimental results demonstrate that the SVM approach gives the best performance.
Abstract: This research aims to study the preferable tourism and
the elements of choosing tourist destination from domestic tourist in
Bangkok and the nearby areas in Thailand.The data were collected by
using 1249 set of questionnaires, in mid-August 2012. The result
illustrates that religious destinations are the most preferable places
for the tourist. The average expense per travel is approximately 47
USD a time. Travellers travel based on the advertisement in the
television and internet and their decisions is based on the reputation
of the destinations.
The result on a place dimension demonstrates the neatness and
well managed location play a crucial role on tourist destination.
Gender, age, marriage status and their origins are affecting their
spending and travelling behaviour. The researcher reckon that
providing the area of arcade, selling the souvenir and promoting
tourism among a young professional group would be an important
key follow the income distribution policy, including managing the
destination to welcome the family group, which the result is to
identified as the highest spending.
Abstract: An inflation–extension test with human vena cava
inferior was performed with the aim to fit a material model. The vein
was modeled as a thick–walled tube loaded by internal pressure and
axial force. The material was assumed to be an incompressible
hyperelastic fiber reinforced continuum. Fibers are supposed to be
arranged in two families of anti–symmetric helices. Considered
anisotropy corresponds to local orthotropy. Used strain energy
density function was based on a concept of limiting strain
extensibility. The pressurization was comprised by four pre–cycles
under physiological venous loading (0 – 4kPa) and four cycles under
nonphysiological loading (0 – 21kPa). Each overloading cycle was
performed with different value of axial weight. Overloading data
were used in regression analysis to fit material model. Considered
model did not fit experimental data so good. Especially predictions
of axial force failed. It was hypothesized that due to
nonphysiological values of loading pressure and different values of
axial weight the material was not preconditioned enough and some
damage occurred inside the wall. A limiting fiber extensibility
parameter Jm was assumed to be in relation to supposed damage.
Each of overloading cycles was fitted separately with different values
of Jm. Other parameters were held the same. This approach turned out
to be successful. Variable value of Jm can describe changes in the
axial force – axial stretch response and satisfy pressure – radius
dependence simultaneously.
Abstract: Real-time measurement of applied forces, like tension, compression, torsion, and bending moment, identifies the transferred energies being applied to the bottomhole assembly (BHA). These forces are highly detrimental to measurement/logging-while-drilling tools and downhole equipment. Real-time measurement of the dynamic downhole behavior, including weight, torque, bending on bit, and vibration, establishes a real-time feedback loop between the downhole drilling system and drilling team at the surface. This paper describes the numerical analysis of the strain data acquired by the measurement tool at different locations on the strain pockets. The strain values obtained by FEA for various loading conditions (tension, compression, torque, and bending moment) are compared against experimental results obtained from an identical experimental setup. Numerical analyses results agree with experimental data within 8% and, therefore, substantiate and validate the FEA model. This FEA model can be used to analyze the combined loading conditions that reflect the actual drilling environment.
Abstract: Routing in MANET is extremely challenging because
of MANETs dynamic features, its limited bandwidth, frequent
topology changes caused by node mobility and power energy
consumption. In order to efficiently transmit data to destinations, the
applicable routing algorithms must be implemented in mobile ad-hoc
networks. Thus we can increase the efficiency of the routing by
satisfying the Quality of Service (QoS) parameters by developing
routing algorithms for MANETs. The algorithms that are inspired by
the principles of natural biological evolution and distributed
collective behavior of social colonies have shown excellence in
dealing with complex optimization problems and are becoming more
popular. This paper presents a survey on few meta-heuristic
algorithms and naturally-inspired algorithms.