Abstract: Proteomics is one of the largest areas of research for
bioinformatics and medical science. An ambitious goal of proteomics
is to elucidate the structure, interactions and functions of all proteins
within cells and organisms. Predicting Protein-Protein Interaction
(PPI) is one of the crucial and decisive problems in current research.
Genomic data offer a great opportunity and at the same time a lot of
challenges for the identification of these interactions. Many methods
have already been proposed in this regard. In case of in-silico
identification, most of the methods require both positive and negative
examples of protein interaction and the perfection of these examples
are very much crucial for the final prediction accuracy. Positive
examples are relatively easy to obtain from well known databases. But
the generation of negative examples is not a trivial task. Current PPI
identification methods generate negative examples based on some
assumptions, which are likely to affect their prediction accuracy.
Hence, if more reliable negative examples are used, the PPI prediction
methods may achieve even more accuracy. Focusing on this issue, a
graph based negative example generation method is proposed, which
is simple and more accurate than the existing approaches. An
interaction graph of the protein sequences is created. The basic
assumption is that the longer the shortest path between two
protein-sequences in the interaction graph, the less is the possibility of
their interaction. A well established PPI detection algorithm is
employed with our negative examples and in most cases it increases
the accuracy more than 10% in comparison with the negative pair
selection method in that paper.
Abstract: This paper presents a mark-up approach to service creation in Next Generation Networks. The approach allows deriving added value from network functions exposed by Parlay/OSA (Open Service Access) interfaces. With OSA interfaces service logic scripts might be executed both on callrelated and call-unrelated events. To illustrate the approach XMLbased language constructions for data and method definitions, flow control, time measuring and supervision and database access are given and an example of OSA application is considered.
Abstract: This article deals with the conceptual modeling under uncertainty. First, the division of information systems with their definition will be described, focusing on those where the construction of a conceptual model is suitable for the design of future information system database. Furthermore, the disadvantages of the traditional approach in creating a conceptual model and database design will be analyzed. A comprehensive methodology for the creation of a conceptual model based on analysis of client requirements and the selection of a suitable domain model is proposed here. This article presents the expert system used for the construction of a conceptual model and is a suitable tool for database designers to create a conceptual model.
Abstract: The objective of this paper, is to apply support vector machine (SVM) approach for the classification of cancerous and normal regions of prostate images. Three kinds of textural features are extracted and used for the analysis: parameters of the Gauss- Markov random field (GMRF), correlation function and relative entropy. Prostate images are acquired by the system consisting of a microscope, video camera and a digitizing board. Cross-validated classification over a database of 46 images is implemented to evaluate the performance. In SVM classification, sensitivity and specificity of 96.2% and 97.0% are achieved for the 32x32 pixel block sized data, respectively, with an overall accuracy of 96.6%. Classification performance is compared with artificial neural network and k-nearest neighbor classifiers. Experimental results demonstrate that the SVM approach gives the best performance.
Abstract: Natural outdoor scene classification is active and
promising research area around the globe. In this study, the
classification is carried out in two phases. In the first phase, the
features are extracted from the images by wavelet decomposition
method and stored in a database as feature vectors. In the second
phase, the neural classifiers such as back-propagation neural network
(BPNN) and resilient back-propagation neural network (RPNN) are
employed for the classification of scenes. Four hundred color images
are considered from MIT database of two classes as forest and street.
A comparative study has been carried out on the performance of the
two neural classifiers BPNN and RPNN on the increasing number of
test samples. RPNN showed better classification results compared to
BPNN on the large test samples.
Abstract: The emerging Semantic Web has been attracted many
researchers and developers. New applications have been developed on top of Semantic Web and many supporting tools introduced to improve its software development process. Metadata modeling is one of development process where supporting tools exists. The existing
tools are lack of readability and easiness for a domain knowledge expert to graphically models a problem in semantic model. In this paper, a metadata modeling tool called RDFGraph is proposed. This
tool is meant to solve those problems. RDFGraph is also designed to work with modern database management systems that support RDF and to improve the performance of the query execution process. The
testing result shows that the rules used in RDFGraph follows the W3C standard and the graphical model produced in this tool is properly translated and correct.
Abstract: Emotion recognition is an important research field that finds lots of applications nowadays. This work emphasizes on recognizing different emotions from speech signal. The extracted features are related to statistics of pitch, formants, and energy contours, as well as spectral, perceptual and temporal features, jitter, and shimmer. The Artificial Neural Networks (ANN) was chosen as the classifier. Working on finding a robust and fast ANN classifier suitable for different real life application is our concern. Several experiments were carried out on different ANN to investigate the different factors that impact the classification success rate. Using a database containing 7 different emotions, it will be shown that with a proper and careful adjustment of features format, training data sorting, number of features selected and even the ANN type and architecture used, a success rate of 85% or even more can be achieved without increasing the system complicity and the computation time
Abstract: Since dealing with high dimensional data is
computationally complex and sometimes even intractable, recently
several feature reductions methods have been developed to reduce
the dimensionality of the data in order to simplify the calculation
analysis in various applications such as text categorization, signal
processing, image retrieval, gene expressions and etc. Among feature
reduction techniques, feature selection is one the most popular
methods due to the preservation of the original features.
In this paper, we propose a new unsupervised feature selection
method which will remove redundant features from the original
feature space by the use of probability density functions of various
features. To show the effectiveness of the proposed method, popular
feature selection methods have been implemented and compared.
Experimental results on the several datasets derived from UCI
repository database, illustrate the effectiveness of our proposed
methods in comparison with the other compared methods in terms of
both classification accuracy and the number of selected features.
Abstract: The development of Artificial Neural Networks
(ANNs) is usually a slow process in which the human expert has to
test several architectures until he finds the one that achieves best
results to solve a certain problem. This work presents a new
technique that uses Genetic Programming (GP) for automatically
generating ANNs. To do this, the GP algorithm had to be changed in
order to work with graph structures, so ANNs can be developed. This
technique also allows the obtaining of simplified networks that solve
the problem with a small group of neurons. In order to measure the
performance of the system and to compare the results with other
ANN development methods by means of Evolutionary Computation
(EC) techniques, several tests were performed with problems based
on some of the most used test databases. The results of those
comparisons show that the system achieves good results comparable
with the already existing techniques and, in most of the cases, they
worked better than those techniques.
Abstract: This paper presents an ESN-based Arabic phoneme
recognition system trained with supervised, forced and combined
supervised/forced supervised learning algorithms. Mel-Frequency
Cepstrum Coefficients (MFCCs) and Linear Predictive Code (LPC)
techniques are used and compared as the input feature extraction
technique. The system is evaluated using 6 speakers from the King
Abdulaziz Arabic Phonetics Database (KAPD) for Saudi Arabia
dialectic and 34 speakers from the Center for Spoken Language
Understanding (CSLU2002) database of speakers with different
dialectics from 12 Arabic countries. Results for the KAPD and
CSLU2002 Arabic databases show phoneme recognition
performances of 72.31% and 38.20% respectively.
Abstract: This paper presents a method for the detection of OD in the retina which takes advantage of the powerful preprocessing techniques such as the contrast enhancement, Gabor wavelet transform for vessel segmentation, mathematical morphology and Earth Mover-s distance (EMD) as the matching process. The OD detection algorithm is based on matching the expected directional pattern of the retinal blood vessels. Vessel segmentation method produces segmentations by classifying each image pixel as vessel or nonvessel, based on the pixel-s feature vector. Feature vectors are composed of the pixel-s intensity and 2D Gabor wavelet transform responses taken at multiple scales. A simple matched filter is proposed to roughly match the direction of the vessels at the OD vicinity using the EMD. The minimum distance provides an estimate of the OD center coordinates. The method-s performance is evaluated on publicly available DRIVE and STARE databases. On the DRIVE database the OD center was detected correctly in all of the 40 images (100%) and on the STARE database the OD was detected correctly in 76 out of the 81 images, even in rather difficult pathological situations.
Abstract: This paper discusses about an intelligent system to be
installed in ambulances providing professional support to the paramedics on board. A video conferencing device over mobile 4G services enables specialists virtually attending the patient being transferred to the hospital. The data centre holds detailed databases
on the patients past medical history and hospitals with the specialists. It also hosts various software modules that compute the shortest traffic –less path to the closest hospital with the required facilities, on inputting the symptoms of the patient, on a real time basis.
Abstract: The use of human hand as a natural interface for humancomputer interaction (HCI) serves as the motivation for research in hand gesture recognition. Vision-based hand gesture recognition involves visual analysis of hand shape, position and/or movement. In this paper, we use the concept of object-based video abstraction for segmenting the frames into video object planes (VOPs), as used in MPEG-4, with each VOP corresponding to one semantically meaningful hand position. Next, the key VOPs are selected on the basis of the amount of change in hand shape – for a given key frame in the sequence the next key frame is the one in which the hand changes its shape significantly. Thus, an entire video clip is transformed into a small number of representative frames that are sufficient to represent a gesture sequence. Subsequently, we model a particular gesture as a sequence of key frames each bearing information about its duration. These constitute a finite state machine. For recognition, the states of the incoming gesture sequence are matched with the states of all different FSMs contained in the database of gesture vocabulary. The core idea of our proposed representation is that redundant frames of the gesture video sequence bear only the temporal information of a gesture and hence discarded for computational efficiency. Experimental results obtained demonstrate the effectiveness of our proposed scheme for key frame extraction, subsequent gesture summarization and finally gesture recognition.
Abstract: As the use of registration packages spreads, the number of the aligned image pairs in image databases (either by manual or automatic methods) increases dramatically. These image pairs can serve as a set of training data. Correspondingly, the images that are to be registered serve as testing data. In this paper, a novel medical image registration method is proposed which is based on the a priori knowledge of the expected joint intensity distribution estimated from pre-aligned training images. The goal of the registration is to find the optimal transformation such that the distance between the observed joint intensity distribution obtained from the testing image pair and the expected joint intensity distribution obtained from the corresponding training image pair is minimized. The distance is measured using the divergence measure based on Tsallis entropy. Experimental results show that, compared with the widely-used Shannon mutual information as well as Tsallis mutual information, the proposed method is computationally more efficient without sacrificing registration accuracy.
Abstract: In data mining, the association rules are used to find
for the associations between the different items of the transactions
database. As the data collected and stored, rules of value can be found
through association rules, which can be applied to help managers
execute marketing strategies and establish sound market frameworks.
This paper aims to use Fuzzy Frequent Pattern growth (FFP-growth)
to derive from fuzzy association rules. At first, we apply fuzzy
partition methods and decide a membership function of quantitative
value for each transaction item. Next, we implement FFP-growth
to deal with the process of data mining. In addition, in order to
understand the impact of Apriori algorithm and FFP-growth algorithm
on the execution time and the number of generated association
rules, the experiment will be performed by using different sizes of
databases and thresholds. Lastly, the experiment results show FFPgrowth
algorithm is more efficient than other existing methods.
Abstract: The given work is devoted to the description of
Information Technologies NAS of Azerbaijan created and
successfully maintained in Institute. On the basis of the decision of
board of the Supreme Certifying commission at the President of the
Azerbaijan Republic and Presidium of National Academy of
Sciences of the Azerbaijan Republic, the organization of training
courses on Computer Sciences for all post-graduate students and
dissertators of the republic, taking of examinations of candidate
minima, it was on-line entrusted to Institute of Information
Technologies of the National Academy of Sciences of Azerbaijan.
Therefore, teaching the computer sciences to post-graduate
students and dissertators a scientific - methodological manual on
effective application of new information technologies for research
works by post-graduate students and dissertators and taking of
candidate minima is carried out in the Educational Center.
Information and communication technologies offer new
opportunities and prospects of their application for teaching and
training. The new level of literacy demands creation of essentially
new technology of obtaining of scientific knowledge. Methods of
training and development, social and professional requirements,
globalization of the communicative economic and political projects
connected with construction of a new society, depends on a level of
application of information and communication technologies in the
educational process. Computer technologies develop ideas of
programmed training, open completely new, not investigated
technological ways of training connected to unique opportunities of
modern computers and telecommunications. Computer technologies
of training are processes of preparation and transfer of the
information to the trainee by means of computer. Scientific and
technical progress as well as global spread of the technologies
created in the most developed countries of the world is the main
proof of the leading role of education in XXI century. Information
society needs individuals having modern knowledge. In practice, all
technologies, using special technical information means (computer,
audio, video) are called information technologies of education.
Abstract: Automated discovery of Rule is, due to its applicability, one of the most fundamental and important method in KDD. It has been an active research area in the recent past. Hierarchical representation allows us to easily manage the complexity of knowledge, to view the knowledge at different levels of details, and to focus our attention on the interesting aspects only. One of such efficient and easy to understand systems is Hierarchical Production rule (HPRs) system. A HPR, a standard production rule augmented with generality and specificity information, is of the following form: Decision If < condition> Generality Specificity . HPRs systems are capable of handling taxonomical structures inherent in the knowledge about the real world. This paper focuses on the issue of mining Quantified rules with crisp hierarchical structure using Genetic Programming (GP) approach to knowledge discovery. The post-processing scheme presented in this work uses Quantified production rules as initial individuals of GP and discovers hierarchical structure. In proposed approach rules are quantified by using Dempster Shafer theory. Suitable genetic operators are proposed for the suggested encoding. Based on the Subsumption Matrix(SM), an appropriate fitness function is suggested. Finally, Quantified Hierarchical Production Rules (HPRs) are generated from the discovered hierarchy, using Dempster Shafer theory. Experimental results are presented to demonstrate the performance of the proposed algorithm.
Abstract: Matching algorithms have significant importance in
speaker recognition. Feature vectors of the unknown utterance are
compared to feature vectors of the modeled speakers as a last step in
speaker recognition. A similarity score is found for every model in
the speaker database. Depending on the type of speaker recognition,
these scores are used to determine the author of unknown speech
samples. For speaker verification, similarity score is tested against a
predefined threshold and either acceptance or rejection result is
obtained. In the case of speaker identification, the result depends on
whether the identification is open set or closed set. In closed set
identification, the model that yields the best similarity score is
accepted. In open set identification, the best score is tested against a
threshold, so there is one more possible output satisfying the
condition that the speaker is not one of the registered speakers in
existing database. This paper focuses on closed set speaker
identification using a modified version of a well known matching
algorithm. The results of new matching algorithm indicated better
performance on YOHO international speaker recognition database.
Abstract: Modern spatial database management systems require a unique Spatial Access Method (SAM) in order solve complex spatial quires efficiently. In this case the spatial data structure takes a prominent place in the SAM. Inadequate data structure leads forming poor algorithmic choices and forging deficient understandings of algorithm behavior on the spatial database. A key step in developing a better semantic spatial object data structure is to quantify the performance effects of semantic and outlier detections that are not reflected in the previous tree structures (R-Tree and its variants). This paper explores a novel SSRO-Tree on SAM to the Topo-Semantic approach. The paper shows how to identify and handle the semantic spatial objects with outlier objects during page overflow/underflow, using gain/loss metrics. We introduce a new SSRO-Tree algorithm which facilitates the achievement of better performance in practice over algorithms that are superior in the R*-Tree and RO-Tree by considering selection queries.
Abstract: Matrix metalloproteinases (MMP) are a class of
structural and functional related enzymes involved in altering the
natural elements of the extracellular matrix. Most of the MMP
structures are cristalographycally determined and published in
WorldWide ProteinDataBank, isolated, in full structure or bound to
natural or synthetic inhibitors. This study proposes an algorithm to
replace missing crystallographic structures in PDB database. We
have compared the results of a chosen docking algorithm with a
known crystallographic structure in order to validate enzyme sites
reconstruction there where crystallographic data are missing.