Abstract: The mathematical modeling of different biological
processes is usually used to predict or assess behavior of systems in
which these processes take place. This study deals with mathematical
and computer modeling of bi-substrate enzymatic reactions with
ping-pong mechanism, which play an important role in different
biochemical pathways. Besides that, three models of competitive
inhibition were designed using different software packages. The main
objective of this study is to represent the results from in silico
investigation of bi-substrate enzymatic reactions with ordered pingpong
mechanism in the presence of competitive inhibitors, as well as
to describe in details the inhibition effects. The simulation of the
models with certain kinetic parameters allowed investigating the
behavior of reactions as well as determined some interesting aspects
concerning influence of different cases of competitive inhibition.
Simultaneous presence of two inhibitors, competitive to the S1 and S2
substrates have been studied. Moreover, we have found the pattern of
simultaneous influence of both inhibitors.
Abstract: MicroRNAs are an important class of gene expression
regulators that are involved in many biological processes including
embryogenesis. miR-125b is a conserved microRNA that is enriched
in the nervous system. We have previously reported the function of
miR-125b in neuronal differentiation of human cell lines. We also
discovered the function of miR-125b in regulating p53 in human and
zebrafish. Here we further characterize the brain defects in zebrafish
embryos injected with morpholinos against miR-125b. Our data
confirm the essential role of miR-125b in brain morphogenesis
particularly in maintaining the balance between proliferation, cell
death and differentiation. We identified lunatic fringe (lfng) as an
additional target of miR-125b in human and zebrafish and suggest
that lfng may mediate the function of miR-125b in neurogenesis.
Together, this report reveals new insights into the function of miR-
125b during neural development of zebrafish.
Abstract: Radiolabeled cyclic RGD peptides targeting integrin αvβ3 are reported as promising agents for the early diagnosis of metastatic tumors. With an aim to improve tumor uptake and retention of the peptide, cyclic RGD peptide dimer E[c (RGDfK)] 2 (E = Glutamic acid, f = phenyl alanine, K = lysine) coupled to the bifunctional chelator DOTA was custom synthesized and radiolabelled with 68Ga. Radiolabelling of cyclic RGD peptide dimer with 68Ga was carried out using HEPES buffer and biological evaluation of the complex was done in nude mice bearing HT29 tumors.
Abstract: This study uses natural water and the surface properties of powdered activated carbon to acclimatize organics, forming biofilms on the surface of powdered activated carbon. To investigate the influence of different hydraulic retention times on the removal efficacy of trace organics in raw water, and to determine the optimal hydraulic retention time of a biological powdered activated carbon system, this study selects ozone-treated water processed by Feng-shan Advanced Water Purification Plant in southern Taiwan for the experiment. The evaluation indicators include assimilable organic carbon, dissolved organic carbon, and total organic carbon. The results of this study can improve the quality of drinking water treated using advanced water purification procedures.
Abstract: The effect of seed inoculation by VA- mycorrhiza and
different levels of phosphorus fertilizer on growth and yield of
sunflower (Azargol cultivar) was studied in experiment farm of
Islamic Azad University, Karaj Branch during 2008 growing season.
The experiment treatments were arranged in factorial based on a
complete randomized block design with three replications. Four
phosphorus fertilizer levels of 25%, 50% 75% and 100% P
recommended with two levels of Mycorrhiza: with and without
Mycorrhiza (control) were assigned in a factorial combination.
Results showed that head diameter, number of seeds in head, seed
yield and oil yield were significantly higher in inoculated plants than
in non-inoculated plants. Head diameter, number of seeds in head,
1000 seeds weight, biological yield, seed yield and oil yield increased
with increasing P level above 75% P recommended in non-inoculated
plants, whereas no significant difference was observed between 75%
and 100% P recommended. The positive effect of mycorrhizal
inoculation decreased with increasing P levels due to decreased
percent root colonization at higher P levels. According to the results
of this experiment, application of mycorrhiza in present of 50% P
recommended had an appropriate performance and could increase
seed yield and oil production to an acceptable level, so it could be
considered as a suitable substitute for chemical phosphorus fertilizer
in organic agricultural systems.
Abstract: In biological and biomedical research motif finding tools are important in locating regulatory elements in DNA sequences. There are many such motif finding tools available, which often yield position weight matrices and significance indicators. These indicators, p-values and E-values, describe the likelihood that a motif alignment is generated by the background process, and the expected number of occurrences of the motif in the data set, respectively. The various tools often estimate these indicators differently, making them not directly comparable. One approach for comparing motifs from different tools, is computing the E-value as the product of the p-value and the number of possible alignments in the data set. In this paper we explore the combinatorics of the motif alignment models OOPS, ZOOPS, and ANR, and propose a generic algorithm for computing the number of possible combinations accurately. We also show that using the wrong alignment model can give E-values that significantly diverge from their true values.
Abstract: Bacterial magnetic nanoparticles have great useful potential in biotechnological and biomedical applications. In this study, a liquid growth medium was modified for cultivation a fastidious magnetotactic bacterium that has been isolated from Anzali
lagoon, Iran in our previous research. These modifications include
change in vitamin, mineral, carbon sources and etcetera. In our
experience, the serum bottles and designed air-tight laboratory bottles
were used to create microaerobic conditions in order to development
of a method for scale-up experiment. This information may serve as a
guide to green chemistry based biological protocols for the synthesis
of magnetic nanoparticles with control over the chemical
composition, morphology and size.
Abstract: All over the world, including the Middle and East
European countries, sustainable tillage and sowing technologies are
applied increasingly broadly with a view to optimising soil resources,
mitigating soil degradation processes, saving energy resources,
preserving biological diversity, etc. As a result, altered conditions of
tillage and sowing technological processes are faced inevitably. The
purpose of this study is to determine the seedbed topsoil hardness
when using a combined sowing coulter in different sustainable tillage
technologies. The research involved a combined coulter consisting
of two dissected blade discs and a shoe coulter. In order to determine
soil hardness at the seedbed area, a multipenetrometer was used. It
was found by experimental studies that in loosened soil, a combined
sowing coulter equally suppresses the furrow bottom, walls and soil
near the furrow; therefore, here, soil hardness was similar at all
researched depths and no significant differences were established. In
loosened and compacted (double-rolled) soil, the impact of a
combined coulter on the hardness of seedbed soil surface was more
considerable at a depth of 2 mm. Soil hardness at the furrow bottom
and walls to a distance of up to 26 mm was 1.1 MPa. At a depth of 10
mm, the greatest hardness was established at the furrow bottom. In
loosened and heavily compacted (rolled for 6 times) soil, at a depth
of 2 and 10 mm a combined coulter most of all compacted the furrow
bottom, which has a hardness of 1.8 MPa. At a depth of 20 mm, soil
hardness within the whole investigated area varied insignificantly and
fluctuated by around 2.0 MPa. The hardness of furrow walls and soil
near the furrow was by approximately 1.0 MPa lower than that at the
furrow bottom
Abstract: In order to increase in chickpea quality and
agroecosystem sustainability, field experiments were carried out in
2007 and 2008 growing seasons. In this research the effects of
different organic, chemical and biological fertilizers were
investigated on grain yield and quality of chickpea. Experimental
units were arranged in split-split plots based on randomized complete
blocks with three replications. The highest amounts of yield and yield
components were obtained in G1×N5 interaction. Significant
increasing of N, P, K, Fe and Mg content in leaves and grains
emphasized on superiority of mentioned treatment because each one
of these nutrients has an approved role in chlorophyll synthesis and
photosynthesis ability of the crop. The combined application of
compost, farmyard manure and chemical phosphorus (N5) had the
best grain quality due to high protein, starch and total sugar contents,
low crude fiber and reduced cooking time.
Abstract: The possibility of radionuclides-related contamination
of lands at agricultural holdings defines the necessity to apply special
protective measures in plant growing. The aim of researches is to
elucidate the influence of polymers applying on biological migration
of man-made anthropogenic radionuclides 90Sr and 137Cs in the
system water - soil – plant. The tests are being carried out under field
conditions with and without application of polymers in root-inhabited
media in more radioecological tension zone (with the radius of 7 km
from the Armenian Nuclear Power Plant). The polymers on the base
of K+, Caµ, KµCaµ ions were tested. Productivity of pepper
depending on the presence and type of polymer material, content of
artificial radionuclides in waters, soil and plant material has been
determined. The character of different polymers influence on the
artificial radionuclides migration and accumulation in the system
water-soil-plant and accumulation in the plants has been cleared up.
Abstract: Horseradish (Armoracia rusticana) is a perennial herb belonging to the Brassicaceae family and contains biologically active substances. The aim of the current research was to determine best method for extraction of phenolic compounds from horseradish roots showing high antiradical activity. Three genotypes (No. 105; No. 106 and variety ‘Turku’) of horseradish roots were extracted with eight different solvents: n-hexane, ethyl acetate, diethyl ether, 2-propanol, acetone, ethanol (95%), ethanol / water / acetic acid (80/20/1 v/v/v) and ethanol / water (80/20 by volume) using two extraction methods (conventional and Soxhlet). As the best solvents ethanol and ethanol / water solutions can be chosen. Although in Soxhlet extracts TPC was higher, scavenging activity of DPPH˙ radicals did not increase. It can be concluded that using Soxhlet extraction method more compounds that are not effective antioxidants.
Abstract: In this study, aerobic digestion of tannery industry
wastewater was carried out using mixed culture obtained from
common effluent treatment plant treating tannery wastewater. The
effect of pH, temperature, inoculum concentration, agitation speed
and initial substrate concentration on the reduction of organic matters
were found. The optimum conditions for COD reduction was found
to be pH - 7 (60%), temperature - 30ÔùªC (61%), inoculum
concentration - 2% (61%), agitation speed - 150rpm (65%) and initial
substrate concentration - 1560 mg COD/L (74%). Kinetics studies
were carried by using Monod model, First order, Diffusional model
and Singh model. From the results it was found that the Monod
model suits well for the degradation of tannery wastewater using
mixed microbial consortium.
Abstract: We have developed a computer program consisting of
6 subtests assessing the children hand dexterity applicable in the
rehabilitation medicine. We have carried out a normative study on a
representative sample of 285 children aged from 7 to 15 (mean age
11.3) and we have proposed clinical standards for three age groups
(7-9, 9-11, 12-15 years). We have shown statistical significance of
differences among the corresponding mean values of the task time
completion. We have also found a strong correlation between the task
time completion and the age of the subjects, as well as we have
performed the test-retest reliability checks in the sample of 84
children, giving the high values of the Pearson coefficients for the
dominant and non-dominant hand in the range 0.740.97 and
0.620.93, respectively.
A new MATLAB-based programming tool aiming at analysis of
cardiologic RR intervals and blood pressure descriptors, is worked
out, too. For each set of data, ten different parameters are extracted: 2
in time domain, 4 in frequency domain and 4 in Poincaré plot
analysis. In addition twelve different parameters of baroreflex
sensitivity are calculated. All these data sets can be visualized in time
domain together with their power spectra and Poincaré plots. If
available, the respiratory oscillation curves can be also plotted for
comparison. Another application processes biological data obtained
from BLAST analysis.
Abstract: Grey mold on grape is caused by the fungus Botrytis
cinerea Pers. Trichodex WP, a new biofungicide, that contains fungal
spores of Trichoderma harzianum Rifai, was used for biological
control of Grey mold on grape. The efficacy of Trichodex WP has
been reported from many experiments. Experiments were carried out
in the locality – Banatski Karlovac, on grapevine species – talijanski
rizling. The trials were set according to instructions of methods
PP1/152(2) and PP1/17(3) , according to a fully randomized block
design. Phytotoxicity was estimated by PP methods 1/135(2), the
intensity of infection according to Towsend Heuberger , the
efficiency by Abbott, the analysis of variance with Duncan test and
PP/181(2). Application of Trichodex WP is limited to the first two
treatments. Other treatments are performed with the fungicides based
on a.i. procymidone, vinclozoline and iprodione.
Abstract: Experiments have been carried out at the Latvia
University of Agriculture Department of Food Technology. The aim
of this work was to assess the effect of thermal treatment in flexible
retort pouch packaging on the quality of potatoes’ produce during the
storage time. Samples were evaluated immediately after retort
thermal treatment; and following 1; 2; 3 and 4 storage months at the
ambient temperature of +18±2ºC in vacuum packaging from
polyamide/polyethylene (PA/PE) and aluminum/polyethylene
(Al/PE) film pouches with barrier properties. Experimentally the
quality of the potatoes’ produce in dry butter and mushroom
dressings was characterized by measuring pH, hardness, color,
microbiological properties and sensory evaluation. The sterilization
was effective in protecting the produce from physical, chemical, and
microbial quality degradation. According to the study of obtained
data, it can be argued that the selected product processing technology
and packaging materials could be applied to provide the safety and
security during four-month storage period.
Abstract: Tasks of the work were study the possible E.coli
contamination in red deer meat, identify pathogenic strains from
isolated E.coli, determine their incidence in red deer meat and
determine the presence of VT1, VT2 and eaeA genes for the
pathogenic E.coli. 8 (10%) samples were randomly selected from 80
analysed isolates of E.coli and PCR reaction was performed on them.
PCR was done both on initial materials – samples of red deer meat -
and for already isolated liqueurs. Two of analysed venison samples
contain verotoxin-producing strains of E. coli. It means that this meat
is not safe to consumer. It was proven by the sequestration reaction of
E. coli and by comparison of the obtained results with the database of
microorganism genome available on the internet that the isolated
culture corresponds to region 16S rDNS of E. coli thus presenting
correctness of the microbiological methods.
Abstract: Von Willebrand-s disease is the most common
inherited bleeding disorder in humans, it
caused by qualitative abnormalities of the von Willebrand factor
(vWF). Our objective is to determine the prevalence of this disease at
part of the Algerian population in the East and the South by a
biological diagnosis based on specific biological tests (automated
platelet count, the bleeding time (TS), the time of cephalin + activator
(TCA), measure of the prothrombin rate (TP), vWF rate and factor
VIII rate, Molecular electrophoresis of vWF multimers in agarose gel
in the presence of SDS). Four patients of type III or severe
Willebrand-s disease were found on 200 suspect cases. All cases are
showed a deficit in vWF rate (< 5%), and factor VIII (P
Abstract: Nowadays for algae cell ultrasonication the
longitudinal ultrasonic piezosystems are used. In this paper a
possibility of creating unique ultrasonic piezoelectric system, which
would allow reducing energy losses and concentrating this energy to
a small closed volume are proposed. The current vibrating systems
whose ultrasonic energy is concentrated inside of hollow cylinder in
which water-algae mixture is flowing. Two, three or multiply
ultrasonic composite systems to concentrate total energy into a
hollow cylinder to creating strong algae cell ultrasonication are used.
The experiments and numerical FEM analysis results using diskshaped
transducer and the first biological test results on algae cell
disruption by ultrasonication are presented as well.
Abstract: The article reviews the current state of large-scale
studies about the impact of electromagnetic field on natural
environment. The scenario of investigations – simulation of natural
conditions at the workplace, taking into consideration the influence
both low and high frequency electromagnetic fields is shown.The
biological effects of low and high frequency electromagnetic fields
are below presented. Results of investigation with animals are shown.
The norms and regulations concerning the levels of electromagnetic
field intensity are reviewed.
Abstract: A horizontal anaerobic digester was developed and
tested in pilot scale for Korean food waste with high water contents
(>80%). The hydrogen sulfide in the biogas was removed by a
biological desulfurization equipment integrated in the horizontal
digester. A mixer of the horizontal digester was designed to easily
remove the sediment in the bottom and scum layers on surface in the
digester. Experimental result for 120 days of operation of the pilot
plant showed a high removal efficiency of 81.2% for organic
substance and high stability during the whole operation period were
acquired. Also food waste was treated at high organic loading rates
over 4 kg•VS/m3∙day and a methane gas production rate of 0.62
m3/kg•VSremoved was accomplished.
The biological desulfurization equipment inside the horizontal
digester was proven to be an economic and effective method to reduce
the biogas desulfurization cost by removing hydrogen sulfide more
than 90% without external desulfurization equipments.