Abstract: Nowadays, Gene Ontology has been used widely by many researchers for biological data mining and information retrieval, integration of biological databases, finding genes, and incorporating knowledge in the Gene Ontology for gene clustering. However, the increase in size of the Gene Ontology has caused problems in maintaining and processing them. One way to obtain their accessibility is by clustering them into fragmented groups. Clustering the Gene Ontology is a difficult combinatorial problem and can be modeled as a graph partitioning problem. Additionally, deciding the number k of clusters to use is not easily perceived and is a hard algorithmic problem. Therefore, an approach for solving the automatic clustering of the Gene Ontology is proposed by incorporating cohesion-and-coupling metric into a hybrid algorithm consisting of a genetic algorithm and a split-and-merge algorithm. Experimental results and an example of modularized Gene Ontology in RDF/XML format are given to illustrate the effectiveness of the algorithm.
Abstract: Knowledge sharing in general and the contextual
access to knowledge in particular, still represent a key challenge in
the knowledge management framework. Researchers on semantic
web and human machine interface study techniques to enhance this
access. For instance, in semantic web, the information retrieval is
based on domain ontology. In human machine interface, keeping
track of user's activity provides some elements of the context that can
guide the access to information. We suggest an approach based on
these two key guidelines, whilst avoiding some of their weaknesses.
The approach permits a representation of both the context and the
design rationale of a project for an efficient access to knowledge. In
fact, the method consists of an information retrieval environment
that, in the one hand, can infer knowledge, modeled as a semantic
network, and on the other hand, is based on the context and the
objectives of a specific activity (the design). The environment we
defined can also be used to gather similar project elements in order to
build classifications of tasks, problems, arguments, etc. produced in a
company. These classifications can show the evolution of design
strategies in the company.
Abstract: We discuss the application of matching in the area of resource discovery and resource allocation in grid computing. We present a formal definition of matchmaking, overview algorithms to evaluate different matchmaking expressions, and develop a matchmaking service for an intelligent grid environment.
Abstract: Using spatial models as a shared common basis of
information about the environment for different kinds of contextaware
systems has been a heavily researched topic in the last years.
Thereby the research focused on how to create, to update, and to
merge spatial models so as to enable highly dynamic, consistent and
coherent spatial models at large scale. In this paper however, we
want to concentrate on how context-aware applications could use this
information so as to adapt their behavior according to the situation
they are in. The main idea is to provide the spatial model
infrastructure with a situation recognition component based on
generic situation templates. A situation template is – as part of a
much larger situation template library – an abstract, machinereadable
description of a certain basic situation type, which could be
used by different applications to evaluate their situation. In this
paper, different theoretical and practical issues – technical, ethical
and philosophical ones – are discussed important for understanding
and developing situation dependent systems based on situation
templates. A basic system design is presented which allows for the
reasoning with uncertain data using an improved version of a
learning algorithm for the automatic adaption of situation templates.
Finally, for supporting the development of adaptive applications, we
present a new situation-aware adaptation concept based on
workflows.
Abstract: This paper seeks to explore the actual classroom
setting, to examine its role for students- learning, and attitude in the
class. It presents a theoretical approach of the classroom as system to
be explored and examines the concrete reality of Greek secondary
education students, under the light of the above approach. Based on
the findings of a quantitative and qualitative research, authors
propose a rather ontological approach of the classroom and underline
what the key-elements for such approach should be. The paper
explores extensively the theoretical dimensions for the change of
paradigm required and addresses the new issues to be considered.
Abstract: We summarize information that facilitates choosing an ontology language for knowledge intensive applications. This paper is a short version of the ontology language state-of-the-art and evolution analysis carried out for choosing an ontology language in the IST Esperonto project. At first, we analyze changes and evolution that took place in the filed of Semantic Web languages during the last years, in particular, around the ontology languages of the RDF/S and OWL family. Second, we present current trends in development of Semantic Web languages, in particular, rule support extensions for Semantic Web languages and emerging ontology languages such as WSMO languages.
Abstract: This paper discusses the development of a qualitative
simulator (abbreviated QRiOM) for predicting the behaviour of
organic chemical reactions. The simulation technique is based on the
qualitative process theory (QPT) ontology. The modelling constructs
of QPT embody notions of causality which can be used to explain the
behaviour of a chemical system. The major theme of this work is
that, in a qualitative simulation environment, students are able to
articulate his/her knowledge through the inspection of explanations
generated by software. The implementation languages are Java and
Prolog. The software produces explanation in various forms that
stresses on the causal theories in the chemical system which can be
effectively used to support learning.
Abstract: This paper looks into areas not covered by prominent
Agent-Oriented Software Engineering (AOSE) methodologies.
Extensive paper review led to the identification of two issues, first
most of these methodologies almost neglect semantic web and
ontology. Second, as expected, each one has its strength and
weakness and may focus on some phases of the development
lifecycle but not all of the phases. The work presented here builds
extensions to a highly regarded AOSE methodology (MaSE) in order
to cover the areas that this methodology does not concentrate on. The
extensions include introducing an ontology stage for semantic
representation and integrating early requirement specification from a
methodology which mainly focuses on that. The integration involved
developing transformation rules (with the necessary handling of nonmatching
notions) between the two sets of representations and
building the software which automates the transformation. The
application of this integration on a case study is also presented in the
paper. The main flow of MaSE stages was changed to smoothly
accommodate the new additions.
Abstract: The internet has become an attractive avenue for
global e-business, e-learning, knowledge sharing, etc. Due to
continuous increase in the volume of web content, it is not practically
possible for a user to extract information by browsing and integrating
data from a huge amount of web sources retrieved by the existing
search engines. The semantic web technology enables advancement
in information extraction by providing a suite of tools to integrate
data from different sources. To take full advantage of semantic web,
it is necessary to annotate existing web pages into semantic web
pages. This research develops a tool, named OWIE (Ontology-based
Web Information Extraction), for semantic web annotation using
domain specific ontologies. The tool automatically extracts
information from html pages with the help of pre-defined ontologies
and gives them semantic representation. Two case studies have been
conducted to analyze the accuracy of OWIE.
Abstract: CIM is the standard formalism for modeling management
information developed by the Distributed Management Task
Force (DMTF) in the context of its WBEM proposal, designed to
provide a conceptual view of the managed environment. In this
paper, we propose the inclusion of formal knowledge representation
techniques, based on Description Logics (DLs) and the Web Ontology
Language (OWL), in CIM-based conceptual modeling, and then we
examine the benefits of such a decision. The proposal is specified as a
CIM metamodel level mapping to a highly expressive subset of DLs
capable of capturing all the semantics of the models. The paper shows
how the proposed mapping can be used for automatic reasoning
about the management information models, as a design aid, by means
of new-generation CASE tools, thanks to the use of state-of-the-art
automatic reasoning systems that support the proposed logic and use
algorithms that are sound and complete with respect to the semantics.
Such a CASE tool framework has been developed by the authors and
its architecture is also introduced. The proposed formalization is not
only useful at design time, but also at run time through the use of
rational autonomous agents, in response to a need recently recognized
by the DMTF.
Abstract: One of the most ancient humankind concerns is knowledge formalization i.e. what a concept is. Concept Analysis, a branch of analytical philosophy, relies on the purpose of decompose the elements, relations and meanings of a concept. This paper aims at presenting a method to make a concept analysis obtaining a knowledge representation suitable to be processed by a computer system using either object-oriented or ontology technologies. Security notion is, usually, known as a set of different concepts related to “some kind of protection". Our method concludes that a more general framework for the concept, despite it is dynamic, is possible and any particular definition (instantiation) depends on the elements used by its construction instead of the concept itself.
Abstract: This paper presents an algebraic approach to optimize
queries in domain-specific database management system
for protein structure data. The approach involves the introduction of
several protein structure specific algebraic operators to query the
complex data stored in an object-oriented database system. The
Protein Algebra provides an extensible set of high-level Genomic
Data Types and Protein Data Types along with a comprehensive
collection of appropriate genomic and protein functions. The paper
also presents a query translator that converts high-level query
specifications in algebra into low-level query specifications in
Protein-QL, a query language designed to query protein structure
data. The query transformation process uses a Protein Ontology that
serves the purpose of a dictionary.
Abstract: Control of complex systems is one of important files in complex systems, that not only relies on the essence of complex systems which is denoted by the core concept – emergence, but also embodies the elementary concept in control theory. Aiming at giving a clear and self-contained description of emergence, the paper introduces a formal way to completely describe the formation and dynamics of emergence in complex systems. Consequently, this paper indicates the Emergence-Oriented Control methodology that contains three kinds of basic control schemes: the direct control, the system re-structuring and the system calibration. As a universal ontology, the Emergence-Oriented Control provides a powerful tool for identifying and resolving control problems in specific systems.
Abstract: An ontology is widely used in many kinds of applications as a knowledge representation tool for domain knowledge. However, even though an ontology schema is well prepared by domain experts, it is tedious and cost-intensive to add instances into the ontology. The most confident and trust-worthy way to add instances into the ontology is to gather instances from tables in the related Web pages. In automatic populating of instances, the primary task is to find the most proper concept among all possible concepts within the ontology for a given table. This paper proposes a novel method for this problem by defining the similarity between the table and the concept using the overlap of their properties. According to a series of experiments, the proposed method achieves 76.98% of accuracy. This implies that the proposed method is a plausible way for automatic ontology population from Web tables.
Abstract: Multi-agent communication of Semantic Web
information cannot be realized without the need to reason with
ontology and agent locations. This is because for an agent to be able to
reason with an external semantic web ontology, it must know where
and how to access to that ontology. Similarly, for an agent to be able to
communicate with another agent, it must know where and how to send
a message to that agent. In this paper we propose a framework of an
agent which can reason with ontology and agent locations in order to
perform reasoning with multiple distributed ontologies and perform
communication with other agents on the semantic web. The agent
framework and its communication mechanism are formulated entirely
in meta-logic.
Abstract: The essence of the 21st century is knowledge economy. Knowledge has become the key resource of economic growth and social development. Construction industry is no exception. Because of the characteristic of complexity, project manager can't depend only on information management. The only way to improve the level of construction project management is to set up a kind of effective knowledge accumulation mechanism. This paper first introduced the IFC standard and the concept of ontology. Then put forward the construction method of the architectural engineering domain ontology based on IFC. And finally build up the concepts, properties and the relationship between the concepts of the ontology. The deficiency of this paper is also pointed out.
Abstract: When designing information systems that deal with
large amount of domain knowledge, system designers need to consider
ambiguities of labeling termsin domain vocabulary for navigating
users in the information space. The goal of this study is to develop a
methodology for system designers to label navigation items, taking
account of ambiguities stems from synonyms or polysemes of labeling
terms. In this paper, we propose a method for concept labeling based
on mappings between domain ontology andthesaurus, and report
results of an empirical evaluation.
Abstract: Increasing growth of information volume in the
internet causes an increasing need to develop new (semi)automatic
methods for retrieval of documents and ranking them according to
their relevance to the user query. In this paper, after a brief review
on ranking models, a new ontology based approach for ranking
HTML documents is proposed and evaluated in various
circumstances. Our approach is a combination of conceptual,
statistical and linguistic methods. This combination reserves the
precision of ranking without loosing the speed. Our approach
exploits natural language processing techniques to extract phrases
from documents and the query and doing stemming on words. Then
an ontology based conceptual method will be used to annotate
documents and expand the query. To expand a query the spread
activation algorithm is improved so that the expansion can be done
flexible and in various aspects. The annotated documents and the
expanded query will be processed to compute the relevance degree
exploiting statistical methods. The outstanding features of our
approach are (1) combining conceptual, statistical and linguistic
features of documents, (2) expanding the query with its related
concepts before comparing to documents, (3) extracting and using
both words and phrases to compute relevance degree, (4) improving
the spread activation algorithm to do the expansion based on
weighted combination of different conceptual relationships and (5)
allowing variable document vector dimensions. A ranking system
called ORank is developed to implement and test the proposed
model. The test results will be included at the end of the paper.
Abstract: Generally, administrative systems in an academic
environment are disjoint and support independent queries. The
objective in this work is to semantically connect these independent
systems to provide support to queries run on the integrated platform.
The proposed framework, by enriching educational material in the
legacy systems, provides a value-added semantics layer where
activities such as annotation, query and reasoning can be carried out
to support management requirements. We discuss the development of
this ontology framework with a case study of UAE University
program administration to show how semantic web technologies can
be used by administration to develop student profiles for better
academic program management.
Abstract: With the development of the Internet, E-commerce is
growing at an exponential rate, and lots of online stores are built up to
sell their goods online. A major factor influencing the successful
adoption of E-commerce is consumer-s trust. For new or unknown
Internet business, consumers- lack of trust has been cited as a major
barrier to its proliferation. As web sites provide key interface for
consumer use of E-Commerce, we investigate the design of web site to
build trust in E-Commerce from a design science approach. A
conceptual model is proposed in this paper to describe the ontology of
online transaction and human-computer interaction. Based on this
conceptual model, we provide a personalized webpage design
approach using Bayesian networks learning method. Experimental
evaluation are designed to show the effectiveness of web
personalization in improving consumer-s trust in new or unknown
online store.