A Generic, Functionally Comprehensive Approach to Maintaining an Ontology as a Relational Database
An ontology is a data model that represents a set of
concepts in a given field and the relationships among those concepts.
As the emphasis on achieving a semantic web continues to escalate,
ontologies for all types of domains increasingly will be developed.
These ontologies may become large and complex, and as their size
and complexity grows, so will the need for multi-user interfaces for
ontology curation. Herein a functionally comprehensive, generic
approach to maintaining an ontology as a relational database is
presented. Unlike many other ontology editors that utilize a database,
this approach is entirely domain-generic and fully supports Webbased,
collaborative editing including the designation of different
levels of authorization for users.
[1] Davies, J., Fensel, D., and Van Harmelen, F. (eds.) (2004), Towards the
Semantic Web: Ontology-driven Knowledge Management. West Sussex,
England, John Wiley & Sons.
[2] Goodwin, R., Lee, J., Stanoi, G., and Leveraging, M. (2005), "Relational
Database Systems for Large-Scale Ontology Management," CIDR
Conference, www.alphaworks.ibm.com/ topics/semantics.
[3] Vysniauskas, E. and Nemuraite, L. (2006), "Transforming Ontology
Representation from OWL to Relational Database," Information
Technology and Control, vol. 35, no. 3A.
[4] Nyulas, C., O-Connor, M., and Tu, S. (2007), "DataMaster - a Plug-in
for Importing Schemas and Data from Relational Databases into
Protégé," 10th International Protégé Conference, July 15-18.
[5] "GO Database Guide," The Gene Ontology Consortium ÔÇö Amigo,
www.geneontology.org/ GO.database.shtml.
[6] Denney, M. (2002), "Ontology Building: A Survey of Editing Tools,"
www.xml.com/pub/a/ 2002/11/06/ontologies.html
[7] Dean, M. and Schreiber, G. (eds) (2004), "OWL Web Ontology
Language Reference," W3C Recommendation,
www.w3.org/TR/2004/REC-owl-ref-20040210.
[8] Maglia, A., Leopold, J., Pugener, A., and Gauch, S. (2007), "An
Anatomical Ontology for Amphibians," Proceedings of the Pacific
Symposium on Biocomputing (PSB 2007), Wailea, Maui, pp. 367-378.
[9] Hitzler, P., Krotzsch, M., Ehrig, M., and Sure, Y. (2005), "What is
Ontology Merging?" American Association for Artificial Intelligence.
[10] Cuenca-Grau, B., Parsia, B., Sirin, E., and Kalyanpur, A. (2006),
"Modularity and Web Ontologies," Proc. of KR.
[11] Day-Richter, J. (2006), "The OBO Flat File Format Specification,
version 1.2," The Gene Ontology, www.geneontology.org/GO.format.
obo-1_2.shtml.
[1] Davies, J., Fensel, D., and Van Harmelen, F. (eds.) (2004), Towards the
Semantic Web: Ontology-driven Knowledge Management. West Sussex,
England, John Wiley & Sons.
[2] Goodwin, R., Lee, J., Stanoi, G., and Leveraging, M. (2005), "Relational
Database Systems for Large-Scale Ontology Management," CIDR
Conference, www.alphaworks.ibm.com/ topics/semantics.
[3] Vysniauskas, E. and Nemuraite, L. (2006), "Transforming Ontology
Representation from OWL to Relational Database," Information
Technology and Control, vol. 35, no. 3A.
[4] Nyulas, C., O-Connor, M., and Tu, S. (2007), "DataMaster - a Plug-in
for Importing Schemas and Data from Relational Databases into
Protégé," 10th International Protégé Conference, July 15-18.
[5] "GO Database Guide," The Gene Ontology Consortium ÔÇö Amigo,
www.geneontology.org/ GO.database.shtml.
[6] Denney, M. (2002), "Ontology Building: A Survey of Editing Tools,"
www.xml.com/pub/a/ 2002/11/06/ontologies.html
[7] Dean, M. and Schreiber, G. (eds) (2004), "OWL Web Ontology
Language Reference," W3C Recommendation,
www.w3.org/TR/2004/REC-owl-ref-20040210.
[8] Maglia, A., Leopold, J., Pugener, A., and Gauch, S. (2007), "An
Anatomical Ontology for Amphibians," Proceedings of the Pacific
Symposium on Biocomputing (PSB 2007), Wailea, Maui, pp. 367-378.
[9] Hitzler, P., Krotzsch, M., Ehrig, M., and Sure, Y. (2005), "What is
Ontology Merging?" American Association for Artificial Intelligence.
[10] Cuenca-Grau, B., Parsia, B., Sirin, E., and Kalyanpur, A. (2006),
"Modularity and Web Ontologies," Proc. of KR.
[11] Day-Richter, J. (2006), "The OBO Flat File Format Specification,
version 1.2," The Gene Ontology, www.geneontology.org/GO.format.
obo-1_2.shtml.
@article{"International Journal of Information, Control and Computer Sciences:62689", author = "Jennifer Leopold and Alton Coalter and Leong Lee", title = "A Generic, Functionally Comprehensive Approach to Maintaining an Ontology as a Relational Database", abstract = "An ontology is a data model that represents a set of
concepts in a given field and the relationships among those concepts.
As the emphasis on achieving a semantic web continues to escalate,
ontologies for all types of domains increasingly will be developed.
These ontologies may become large and complex, and as their size
and complexity grows, so will the need for multi-user interfaces for
ontology curation. Herein a functionally comprehensive, generic
approach to maintaining an ontology as a relational database is
presented. Unlike many other ontology editors that utilize a database,
this approach is entirely domain-generic and fully supports Webbased,
collaborative editing including the designation of different
levels of authorization for users.", keywords = "Ontology Editor, Relational Database, CollaborativeCuration.", volume = "3", number = "4", pages = "1185-11", }