Synchrotron X-ray Based Investigation of Fe Environment in Porous Anode of Shewanella oneidensis Microbial Fuel Cell
The iron environment in Fe-doped Vycor Anode was
investigated with EXAFS using Brookhaven Synchrotron Light
Source. The iron-reducing Shewanella oneidensis culture was grown
in a microbial fuel cell under anaerobic respiration. The Fe bond
length was found to decrease and correlate with the amount of
biofilm growth on the Fe-doped Vycor Anode. The data suggests that
Fe-doped Vycor Anode would be a good substrate to study the
Shewanella oneidensis nanowire structure using EXAFS.
[1] Generation of Electricity and Analysis of Microbial Communities in
Wheat Straw Biomass-Powered Microbial Fuel Cells. Yifeng Zhang,
Booki Min, Liping Huang, and Irini Angelidaki. Applied and
Environmental Microbiology, June 2009, p. 3389–3395
[2] Anode Biofilm Transcriptomics Reveals Outer Surface Components
Essential for High Density Current Production in Geobacter
sulfurreducens Fuel Cells. Nevin KP, Kim B-C, Glaven RH, Johnson JP,
Woodard TL, et al. (2009) PLoS ONE 4(5): e5628
doi:10.1371/journal.pone.0005628
[3] Biofilm and Nanowire Production Leads to Increased Current in
Geobacter sulfurreducens Fuel Cells. Gemma Reguera, Kelly P. Nevin,
Julie S. Nicoll, Sean F. Covalla, Trevor L. Woodard, and Derek R.
Lovley. Applied and Environmental Microbiology, Nov. 2006, p. 7345–
7348
[4] Purification and Characterization of OmcZ, an Outer-Surface,
Octaheme c-Type Cytochrome Essential for Optimal Current Production
by Geobacter sulfurreducens. Kengo Inoue, Xinlei Qian, Leonor
Morgado, Byoung-Chan Kim, Tünde Mester, Mounir Izallalen, Carlos
A. Salgueiro, and Derek R. Lovley. Applied and Environmental
Microbiology, June 2010, p. 3999–4007
[5] Enhancement of Survival and Electricity Production in an Engineered
Bacterium by Light Driven Proton Pumping. Ethan T. Johnson, Daniel
B. Baron, Bele´n Naranjo, Daniel R. Bond, Claudia Schmidt-Dannert, 1
and Jeffrey A. Gralnick. Applied and Environmental Microbiology, July
2010, p. 4123–4129
[6] Substrate-Level Phosphorylation Is the Primary Source of Energy
Conservation during Anaerobic Respiration of Shewanella oneidensis
Strain MR-1. Kristopher A. Hunt, Jeffrey M. Flynn, Bele´n Naranjo,
Indraneel D. Shikhare, and Jeffrey A. Gralnick Journal of Bacteriology,
July 2010, p. 3345–3351
[7] Electrically conductive bacterial nanowires produced by Shewanella
oneidensis strain MR-1 and other microorganisms. Yuri A. Gorby,
Svetlana Yanina, Jeffrey S. McLean, Kevin M. Rosso, Dianne Moyles,
Alice Dohnalkova, Terry J. Beveridge, In Seop Chang, Byung Hong
Kim, Kyung Shik Kim, David E. Culley, Samantha B. Reed, Margaret
F. Romine, Daad A. Saffarini, Eric A. Hill, Liang Shi, Dwayne A. Elias,
David W. Kennedy, Grigoriy Pinchuk, Kazuya Watanabe, Shun’ichi
Ishii, Bruce Logan, Kenneth H. Nealson, and Jim K. Fredrickson.
PNAS, July 25, 2006, vol. 103, p.11358-11363
[8] Lower BH1, Shi L, Yongsunthon R, Droubay TC, McCready DE, Lower
SK. Specific bonds between an iron oxide surface and outer membrane
cytochromes MtrC and OmcA from Shewanella oneidensis MR-1. J
Bacteriol. 2007 Jul; 189(13):4944-52. Epub 2007 Apr 27.
http://www.ncbi.nlm.nih.gov/pubmed/17468239
[9] Mitchell AC1, Peterson L, Reardon CL, Reed SB, Culley DE, Romine
MR, Geesey GG. Role of outer membrane c-type cytochromes MtrC and
OmcA in Shewanella oneidensis MR-1 cell production, accumulation,
and detachment during respiration on hematite.. Geobiology. 2012 Jul;
10(4):355-70. doi: 10.1111/j.1472-4669.2012.00321.x. Epub 2012 Feb
23. http://www.ncbi.nlm.nih.gov/pubmed/22360295
[10] A gold-sputtered carbon paper as an anode for improved electricity
generation from a microbial fuel cell inoculated with Shewanella
oneidensis MR-1. Sun M, Zhang F, Tong ZH, Sheng GP, Chen YZ,
Zhao Y, Chen YP, Zhou SY, Liu G, Tian YC, Yu HQ. Biosens
Bioelectron. 2010 Oct 15; 26(2):338-43. Epub 2010 Aug 11
[11] Jian Ding, Tongxiang Fan, Di Zhang, Katsuhiko Saito, Qixin Guo.
Structural and optical properties of porous iron oxide. Solid State
Communications Volume 151, Issue 10, May 2011, Pages 802–805
http://www.sciencedirect.com/science/article/pii/S0038109811001104
[12] Photochemistry of Fe(CO)5 adsorbed onto porous Vycor glass. Michael
S. Darsillo, Harry D. Gafney, Michael S. Paquette J. Am. Chem. Soc.,
1987, 109 (11), pp 3275–3286
[13] Iron and iron oxide particle growth in porous Vycor glass; correlation
with optical and magnetic properties. Sunil, D.; Gafney, H. D.;
Rafailovich, M. H.; Sokolov, J.; Gambino, R. J.; Huang, D. M. Journal
of Non-Crystalline Solids (2003), 319(1,2), 154-162.
[14] Jinquan Don, Sunil, D., Harry Gafney. Influence of Amorphous Silicon
Matrices on the Formation, Structure, and Chemistry of iron, iron oxide
nanoparticles. Journal of the American Chemical Society 131(41)
14768-14777 (2009).
[15] James M. Byrne, Nicole Klueglein, Carolyn Pearce, Kevin M. Rosso,
Erwin Appel, Andreas Kappler. Redox cycling of Fe(II) and Fe(III) in
magnetite by Fe-metabolizing bacteria. Science 27 March 2015: Vol.
347 no. 6229 pp. 1473-1476
[16] Pirbadian S, El-Naggar MY. Multistep hopping and extracellular charge
transfer in microbial redox chains. Phys Chem Chem Phys. 2012 Oct
28; 14(40):13802-8. http://www.ncbi.nlm.nih.gov/pubmed/22797729
[17] Pirbadian S, Barchinger SE, Leung KM, Byun HS, Jangir Y, Bouhenni
RA, Reed SB, Romine MF, Saffarini DA, Shi L, Gorby YA, Golbeck
JH, El-Naggar MY. Shewanella oneidensis MR-1 nanowires are outer
membrane and periplasmic extensions of the extracellular electron
transport components. Proc Natl Acad Sci U S A. 2014 Sep 2;
111(35):12883-8. http://www.ncbi.nlm.nih.gov/pubmed/25143589
[18] Gorgel M, Ulstrup JJ, Bøggild A, Jones NC, Hoffmann SV, Nissen P,
Boesen T. High-resolution structure of a type IV pilin from the metalreducing
bacterium Shewanella oneidensis. BMC Struct Biol. 2015 Feb
27; 15(1):4. http://www.ncbi.nlm.nih.gov/pubmed/25886849
[19] Malvankar NS, Lovley DR. Microbial nanowires for bioenergy
applications. Curr Opin Biotechnol. 2014 Jun; 27:88-95.
http://www.ncbi.nlm.nih.gov/pubmed/24863901
[20] Polizzi NF, Skourtis SS, Beratan DN. Physical constraints on charge
transport through bacterial nanowires. Faraday Discuss. 2012; 155:43-
62; discussion 103-14. http://www.ncbi.nlm.nih.gov/pubmed/22470966
[1] Generation of Electricity and Analysis of Microbial Communities in
Wheat Straw Biomass-Powered Microbial Fuel Cells. Yifeng Zhang,
Booki Min, Liping Huang, and Irini Angelidaki. Applied and
Environmental Microbiology, June 2009, p. 3389–3395
[2] Anode Biofilm Transcriptomics Reveals Outer Surface Components
Essential for High Density Current Production in Geobacter
sulfurreducens Fuel Cells. Nevin KP, Kim B-C, Glaven RH, Johnson JP,
Woodard TL, et al. (2009) PLoS ONE 4(5): e5628
doi:10.1371/journal.pone.0005628
[3] Biofilm and Nanowire Production Leads to Increased Current in
Geobacter sulfurreducens Fuel Cells. Gemma Reguera, Kelly P. Nevin,
Julie S. Nicoll, Sean F. Covalla, Trevor L. Woodard, and Derek R.
Lovley. Applied and Environmental Microbiology, Nov. 2006, p. 7345–
7348
[4] Purification and Characterization of OmcZ, an Outer-Surface,
Octaheme c-Type Cytochrome Essential for Optimal Current Production
by Geobacter sulfurreducens. Kengo Inoue, Xinlei Qian, Leonor
Morgado, Byoung-Chan Kim, Tünde Mester, Mounir Izallalen, Carlos
A. Salgueiro, and Derek R. Lovley. Applied and Environmental
Microbiology, June 2010, p. 3999–4007
[5] Enhancement of Survival and Electricity Production in an Engineered
Bacterium by Light Driven Proton Pumping. Ethan T. Johnson, Daniel
B. Baron, Bele´n Naranjo, Daniel R. Bond, Claudia Schmidt-Dannert, 1
and Jeffrey A. Gralnick. Applied and Environmental Microbiology, July
2010, p. 4123–4129
[6] Substrate-Level Phosphorylation Is the Primary Source of Energy
Conservation during Anaerobic Respiration of Shewanella oneidensis
Strain MR-1. Kristopher A. Hunt, Jeffrey M. Flynn, Bele´n Naranjo,
Indraneel D. Shikhare, and Jeffrey A. Gralnick Journal of Bacteriology,
July 2010, p. 3345–3351
[7] Electrically conductive bacterial nanowires produced by Shewanella
oneidensis strain MR-1 and other microorganisms. Yuri A. Gorby,
Svetlana Yanina, Jeffrey S. McLean, Kevin M. Rosso, Dianne Moyles,
Alice Dohnalkova, Terry J. Beveridge, In Seop Chang, Byung Hong
Kim, Kyung Shik Kim, David E. Culley, Samantha B. Reed, Margaret
F. Romine, Daad A. Saffarini, Eric A. Hill, Liang Shi, Dwayne A. Elias,
David W. Kennedy, Grigoriy Pinchuk, Kazuya Watanabe, Shun’ichi
Ishii, Bruce Logan, Kenneth H. Nealson, and Jim K. Fredrickson.
PNAS, July 25, 2006, vol. 103, p.11358-11363
[8] Lower BH1, Shi L, Yongsunthon R, Droubay TC, McCready DE, Lower
SK. Specific bonds between an iron oxide surface and outer membrane
cytochromes MtrC and OmcA from Shewanella oneidensis MR-1. J
Bacteriol. 2007 Jul; 189(13):4944-52. Epub 2007 Apr 27.
http://www.ncbi.nlm.nih.gov/pubmed/17468239
[9] Mitchell AC1, Peterson L, Reardon CL, Reed SB, Culley DE, Romine
MR, Geesey GG. Role of outer membrane c-type cytochromes MtrC and
OmcA in Shewanella oneidensis MR-1 cell production, accumulation,
and detachment during respiration on hematite.. Geobiology. 2012 Jul;
10(4):355-70. doi: 10.1111/j.1472-4669.2012.00321.x. Epub 2012 Feb
23. http://www.ncbi.nlm.nih.gov/pubmed/22360295
[10] A gold-sputtered carbon paper as an anode for improved electricity
generation from a microbial fuel cell inoculated with Shewanella
oneidensis MR-1. Sun M, Zhang F, Tong ZH, Sheng GP, Chen YZ,
Zhao Y, Chen YP, Zhou SY, Liu G, Tian YC, Yu HQ. Biosens
Bioelectron. 2010 Oct 15; 26(2):338-43. Epub 2010 Aug 11
[11] Jian Ding, Tongxiang Fan, Di Zhang, Katsuhiko Saito, Qixin Guo.
Structural and optical properties of porous iron oxide. Solid State
Communications Volume 151, Issue 10, May 2011, Pages 802–805
http://www.sciencedirect.com/science/article/pii/S0038109811001104
[12] Photochemistry of Fe(CO)5 adsorbed onto porous Vycor glass. Michael
S. Darsillo, Harry D. Gafney, Michael S. Paquette J. Am. Chem. Soc.,
1987, 109 (11), pp 3275–3286
[13] Iron and iron oxide particle growth in porous Vycor glass; correlation
with optical and magnetic properties. Sunil, D.; Gafney, H. D.;
Rafailovich, M. H.; Sokolov, J.; Gambino, R. J.; Huang, D. M. Journal
of Non-Crystalline Solids (2003), 319(1,2), 154-162.
[14] Jinquan Don, Sunil, D., Harry Gafney. Influence of Amorphous Silicon
Matrices on the Formation, Structure, and Chemistry of iron, iron oxide
nanoparticles. Journal of the American Chemical Society 131(41)
14768-14777 (2009).
[15] James M. Byrne, Nicole Klueglein, Carolyn Pearce, Kevin M. Rosso,
Erwin Appel, Andreas Kappler. Redox cycling of Fe(II) and Fe(III) in
magnetite by Fe-metabolizing bacteria. Science 27 March 2015: Vol.
347 no. 6229 pp. 1473-1476
[16] Pirbadian S, El-Naggar MY. Multistep hopping and extracellular charge
transfer in microbial redox chains. Phys Chem Chem Phys. 2012 Oct
28; 14(40):13802-8. http://www.ncbi.nlm.nih.gov/pubmed/22797729
[17] Pirbadian S, Barchinger SE, Leung KM, Byun HS, Jangir Y, Bouhenni
RA, Reed SB, Romine MF, Saffarini DA, Shi L, Gorby YA, Golbeck
JH, El-Naggar MY. Shewanella oneidensis MR-1 nanowires are outer
membrane and periplasmic extensions of the extracellular electron
transport components. Proc Natl Acad Sci U S A. 2014 Sep 2;
111(35):12883-8. http://www.ncbi.nlm.nih.gov/pubmed/25143589
[18] Gorgel M, Ulstrup JJ, Bøggild A, Jones NC, Hoffmann SV, Nissen P,
Boesen T. High-resolution structure of a type IV pilin from the metalreducing
bacterium Shewanella oneidensis. BMC Struct Biol. 2015 Feb
27; 15(1):4. http://www.ncbi.nlm.nih.gov/pubmed/25886849
[19] Malvankar NS, Lovley DR. Microbial nanowires for bioenergy
applications. Curr Opin Biotechnol. 2014 Jun; 27:88-95.
http://www.ncbi.nlm.nih.gov/pubmed/24863901
[20] Polizzi NF, Skourtis SS, Beratan DN. Physical constraints on charge
transport through bacterial nanowires. Faraday Discuss. 2012; 155:43-
62; discussion 103-14. http://www.ncbi.nlm.nih.gov/pubmed/22470966
@article{"International Journal of Biological, Life and Agricultural Sciences:70018", author = "Sunil Dehipawala and Gayathrie Amarasuriya and N. Gadura and G. Tremberger Jr and D. Lieberman and Harry Gafney and Todd Holden and T. Cheung", title = "Synchrotron X-ray Based Investigation of Fe Environment in Porous Anode of Shewanella oneidensis Microbial Fuel Cell", abstract = "The iron environment in Fe-doped Vycor Anode was
investigated with EXAFS using Brookhaven Synchrotron Light
Source. The iron-reducing Shewanella oneidensis culture was grown
in a microbial fuel cell under anaerobic respiration. The Fe bond
length was found to decrease and correlate with the amount of
biofilm growth on the Fe-doped Vycor Anode. The data suggests that
Fe-doped Vycor Anode would be a good substrate to study the
Shewanella oneidensis nanowire structure using EXAFS.", keywords = "EXAFS, Fourier Transform, Microbial Fuel Cell,
Shewanella oneidensis.", volume = "9", number = "6", pages = "609-4", }
