Abstract: Due to the ever growing amount of publications about
protein-protein interactions, information extraction from text is
increasingly recognized as one of crucial technologies in
bioinformatics. This paper presents a Protein Interaction Extraction
System using a Link Grammar Parser from biomedical abstracts
(PIELG). PIELG uses linkage given by the Link Grammar Parser to
start a case based analysis of contents of various syntactic roles as
well as their linguistically significant and meaningful combinations.
The system uses phrasal-prepositional verbs patterns to overcome
preposition combinations problems. The recall and precision are
74.4% and 62.65%, respectively. Experimental evaluations with two
other state-of-the-art extraction systems indicate that PIELG system
achieves better performance. For further evaluation, the system is
augmented with a graphical package (Cytoscape) for extracting
protein interaction information from sequence databases. The result
shows that the performance is remarkably promising.
Abstract: Various sounds generated in the chest are included in
auscultation sound. Adaptive Noise Canceller (ANC) is one of the
useful techniques for biomedical signal. But the ANC is not suitable
for auscultation sound. Because the ANC needs two input channels as
a primary signal and a reference signals, but a stethoscope can
provide just one input sound. Therefore, in this paper, it was
proposed the Single Input ANC (SIANC) for suppression of breath
sound in a cardiac auscultation sound. For the SIANC, it was
proposed that the reference generation system which included Heart
Sound Detector, Control and Reference Generator. By experiment
and comparison, it was confirmed that the proposed SIANC was
efficient for heart sound enhancement and it was independent of
variations of a heartbeat.
Abstract: Medical image data hiding has strict constrains such
as high imperceptibility, high capacity and high robustness.
Achieving these three requirements simultaneously is highly
cumbersome. Some works have been reported in the literature on
data hiding, watermarking and stegnography which are suitable for
telemedicine applications. None is reliable in all aspects. Electronic
Patient Report (EPR) data hiding for telemedicine demand it blind
and reversible. This paper proposes a novel approach to blind
reversible data hiding based on integer wavelet transform.
Experimental results shows that this scheme outperforms the prior
arts in terms of zero BER (Bit Error Rate), higher PSNR (Peak Signal
to Noise Ratio), and large EPR data embedding capacity with
WPSNR (Weighted Peak Signal to Noise Ratio) around 53 dB,
compared with the existing reversible data hiding schemes.
Abstract: Ultra-low-power (ULP) circuits have received
widespread attention due to the rapid growth of biomedical
applications and Battery-less Electronics. Subthreshold region of
transistor operation is used in ULP circuits. Major research challenge
in the subthreshold operating region is to extract the ULP benefits
with minimal degradation in speed and robustness. Process, Voltage
and Temperature (PVT) variations significantly affect the
performance of subthreshold circuits. Designed performance
parameters of ULP circuits may vary largely due to temperature
variations. Hence, this paper investigates the effect of temperature
variation on device and circuit performance parameters at different
biasing voltages in the subthreshold region. Simulation results clearly
demonstrate that in deep subthreshold and near threshold voltage
regions, performance parameters are significantly affected whereas in
moderate subthreshold region, subthreshold circuits are more
immune to temperature variations. This establishes that moderate
subthreshold region is ideal for temperature immune circuits.
Abstract: The zero inflated models are usually used in modeling
count data with excess zeros where the existence of the excess zeros
could be structural zeros or zeros which occur by chance. These type
of data are commonly found in various disciplines such as finance,
insurance, biomedical, econometrical, ecology, and health sciences
which involve sex and health dental epidemiology. The most popular
zero inflated models used by many researchers are zero inflated
Poisson and zero inflated negative binomial models. In addition, zero
inflated generalized Poisson and zero inflated double Poisson models
are also discussed and found in some literature. Recently zero
inflated inverse trinomial model and zero inflated strict arcsine
models are advocated and proven to serve as alternative models in
modeling overdispersed count data caused by excessive zeros and
unobserved heterogeneity. The purpose of this paper is to review
some related literature and provide a variety of examples from
different disciplines in the application of zero inflated models.
Different model selection methods used in model comparison are
discussed.
Abstract: Pattern recognition is the research area of Artificial Intelligence that studies the operation and design of systems that recognize patterns in the data. Important application areas are image analysis, character recognition, fingerprint classification, speech analysis, DNA sequence identification, man and machine diagnostics, person identification and industrial inspection. The interest in improving the classification systems of data analysis is independent from the context of applications. In fact, in many studies it is often the case to have to recognize and to distinguish groups of various objects, which requires the need for valid instruments capable to perform this task. The objective of this article is to show several methodologies of Artificial Intelligence for data classification applied to biomedical patterns. In particular, this work deals with the realization of a Computer-Aided Detection system (CADe) that is able to assist the radiologist in identifying types of mammary tumor lesions. As an additional biomedical application of the classification systems, we present a study conducted on blood samples which shows how these methods may help to distinguish between carriers of Thalassemia (or Mediterranean Anaemia) and healthy subjects.
Abstract: Engineered nanoparticles’ usage rapidly increased in
various applications in the last decade due to their unusual properties.
However, there is an ever increasing concern to understand their
toxicological effect in human health. Particularly, metal and metal
oxide nanoparticles have been used in various sectors including
biomedical, food and agriculture. But their impact on human health is
yet to be fully understood. In this present investigation, we assessed
the toxic effect of engineered nanoparticles (ENPs) including Ag,
MgO and Co3O4 nanoparticles (NPs) on human mesenchymal stem
cells (hMSC) adopting cell viability and cellular morphological
changes as tools The results suggested that silver NPs are more toxic
than MgO and Co3O4NPs. The ENPs induced cytotoxicity and
nuclear morphological changes in hMSC depending on dose. The cell
viability decreases with increase in concentration of ENPs. The
cellular morphology studies revealed that ENPs damaged the cells.
These preliminary findings have implications for the use of these
nanoparticles in food industry with systematic regulations.
Abstract: The lubricating properties of commercially available
mucins originating from different animal organs, namely bovine
submaxillary mucin (BSM) and porcine gastric mucin (PGM), have
been characterized at polymeric surfaces for biomedical applications.
Atomic force microscopy (AFM) and pin-on-disk tribometry have
been employed for tribological studies at nanoscale and macroscale
contacts, respectively. Polystyrene (PS) was employed to represent
‘rigid’ contacts, whereas poly(dimethylsiloxane) (PDMS) was
employed to represent ‘soft contacts’. To understand the lubricating
properties of mucins in correlation with the coverage on surfaces,
adsorption properties of mucins onto the polymeric substrates have
been characterized by means of optical waveguide light-mode
spectroscopy (OWLS). Both mucins showed facile adsorption onto
both polymeric substrates, but the lubricity was highly dependent
upon the pH change between 2 and 7.
Abstract: The last years have seen an increasing use of image analysis techniques in the field of biomedical imaging, in particular in microscopic imaging. The basic step for most of the image analysis techniques relies on a background image free of objects of interest, whether they are cells or histological samples, to perform further analysis, such as segmentation or mosaicing. Commonly, this image consists of an empty field acquired in advance. However, many times achieving an empty field could not be feasible. Or else, this could be different from the background region of the sample really being studied, because of the interaction with the organic matter. At last, it could be expensive, for instance in case of live cell analyses. We propose a non parametric and general purpose approach where the background is built automatically stemming from a sequence of images containing even objects of interest. The amount of area, in each image, free of objects just affects the overall speed to obtain the background. Experiments with different kinds of microscopic images prove the effectiveness of our approach.
Abstract: Bionanotechnology deals with nanoscopic interactions between nanostructured materials and biological systems. Polymer nanocomposites with optimized biological activity have attracted great attention. Nanoclay is considered as reinforcing nanofiller in manufacturing of high performance nanocomposites. In current study, organomodified-nanoclay with negatively charged silicate layers was incorporated into biomedical grade silicone rubber. Nanoparticle loading has been tailored to enhance cell behavior. Addition of nanoparticles led to improved mechanical properties of substrate with enhanced strength and stiffness while no toxic effects was observed. Results indicated improved viability and proliferation of cells by addition of nanofillers. The improved mechanical properties of the matrix result in proper cell response through adjustment and arrangement of cytoskeletal fibers. Results can be applied in tissue engineering when enhanced substrates are required for improvement of cell behavior for in vivo applications.
Abstract: The blood ducts must be occluded to avoid loss of
blood from vessels in laparoscopic surgeries. This paper presents a
locking mechanism to be used in a ligation laparoscopic procedure
(LigLAP I), as an alternative solution for a stapling procedure.
Currently, stapling devices are being used to occlude vessels. Using
these devices may result in some problems, including injury of bile
duct, taking up a great deal of space behind the vessel, and bile leak.
In this new procedure, a two-layer suture occludes a vessel. A
locking mechanism is also required to hold the suture. Since there is
a limited space at the device tip, a Shape Memory Alloy (SMA)
actuator is used in this mechanism. Suitability for cleanroom
applications, small size, and silent performance are among the
advantages of SMA actuators in biomedical applications. An
experimental study is conducted to examine the function of the
locking mechanism. To set up the experiment, a prototype of a
locking mechanism is built using nitinol, which is a nickel-titanium
shape memory alloy. The locking mechanism successfully locks a
polymer suture for all runs of the experiment. In addition, the effects
of various surface materials on the applied pulling forces are studied.
Various materials are mounted at the mechanism tip to compare the
maximum pulling forces applied to the suture for each material. The
results show that the various surface materials on the device tip
provide large differences in the applied pulling forces.
Abstract: With getting older in the whole population, the
prevalence of stroke and its residual disability is getting higher and
higher recently in Taiwan. The functional electrical stimulation
cycling system (FESCS) is useful for hemiplegic patients. Because
that the muscle of stroke patients is under hybrid activation. The raw
electromyography (EMG) represents the residual muscle force of
stroke subject whereas the peak-to-peak of stimulus EMG indicates the
force enhancement benefiting from ES. It seems that EMG signals
could be used for a parameter of feedback control mechanism. So, we
design the feedback control protocol of FESCS, it includes
physiological signal recorder, FPGA biomedical module, DAC and
electrical stimulation circuit. Using the intensity of real-time EMG
signal obtained from patients, as a feedback control method for the
output voltage of FES-cycling system.
Abstract: The field of biomedical materials plays an imperative
requisite and a critical role in manufacturing a variety of biological
artificial replacements in a modern world. Recently, titanium (Ti)
materials are being used as biomaterials because of their superior
corrosion resistance and tremendous specific strength, free- allergic
problems and the greatest biocompatibility compared to other
competing biomaterials such as stainless steel, Co-Cr alloys,
ceramics, polymers, and composite materials. However, regardless of
these excellent performance properties, Implantable Ti materials have
poor shear strength and wear resistance which limited their
applications as biomaterials. Even though the wear properties of Ti
alloys has revealed some improvements, the crucial effectiveness of
biomedical Ti alloys as wear components requires a comprehensive
deep understanding of the wear reasons, mechanisms, and techniques
that can be used to improve wear behavior. This review examines
current information on the effect of thermal and thermomechanical
processing of implantable Ti materials on the long-term prosthetic
requirement which related with wear behavior. This paper focuses
mainly on the evolution, evaluation and development of effective
microstructural features that can improve wear properties of bio
grade Ti materials using thermal and thermomechanical treatments.
Abstract: Rapid Prototyping (RP) is a technology that produces models and prototype parts from 3D CAD model data, CT/MRI scan data, and model data created from 3D object digitizing systems. There are several RP process like Stereolithography (SLA), Solid Ground Curing (SGC), Selective Laser Sintering (SLS), Fused Deposition Modeling (FDM), 3D Printing (3DP) among them SLS and FDM RP processes are used to fabricate pattern of custom cranial implant. RP technology is useful in engineering and biomedical application. This is helpful in engineering for product design, tooling and manufacture etc. RP biomedical applications are design and development of medical devices, instruments, prosthetics and implantation; it is also helpful in planning complex surgical operation. The traditional approach limits the full appreciation of various bony structure movements and therefore the custom implants produced are difficult to measure the anatomy of parts and analyze the changes in facial appearances accurately. Cranioplasty surgery is a surgical correction of a defect in cranial bone by implanting a metal or plastic replacement to restore the missing part. This paper aims to do a comparative study on the dimensional error of CAD and SLS RP Models for reconstruction of cranial defect by comparing the virtual CAD with the physical RP model of a cranial defect.
Abstract: Images are important in disease research, education,
and clinical medicine. This paper presents a Web Service Platform
(WSP) for support multiple programming languages to access image
from biomedical databases. The main function WSP is to allow web
users access image from biomedical databases. The WSP will
receive web user-s queries. After that, it will send to Querying
Server (QS) and the QS will search and retrieve data from
biomedical databases. Finally, the information will display to the
web users. Simple application is developed and tested for
experiment purpose. Result from experiment indicated WSP can be
used in biomedical environment.
Abstract: In this paper, computational fluid dynamics (CFD) is utilized to characterize a prototype biolistic delivery system, the biomedical device based on the contoured-shock-tube design (CST), with the aim at investigating shocks induced flow instabilities within the contoured shock tube. The shock/interface interactions, the growth of perturbation at an interface between two fluids of different density are interrogated. The key features of the gas dynamics and gas-particle interaction are discussed
Abstract: The counting and analysis of blood cells allows the
evaluation and diagnosis of a vast number of diseases. In particular,
the analysis of white blood cells (WBCs) is a topic of great interest to
hematologists. Nowadays the morphological analysis of blood cells is
performed manually by skilled operators. This involves numerous
drawbacks, such as slowness of the analysis and a nonstandard
accuracy, dependent on the operator skills. In literature there are only
few examples of automated systems in order to analyze the white
blood cells, most of which only partial. This paper presents a
complete and fully automatic method for white blood cells
identification from microscopic images. The proposed method firstly
individuates white blood cells from which, subsequently, nucleus and
cytoplasm are extracted. The whole work has been developed using
MATLAB environment, in particular the Image Processing Toolbox.
Abstract: Deformable active contours are widely used in
computer vision and image processing applications for image
segmentation, especially in biomedical image analysis. The active
contour or “snake" deforms towards a target object by controlling the
internal, image and constraint forces. However, if the contour
initialized with a lesser number of control points, there is a high
probability of surpassing the sharp corners of the object during
deformation of the contour. In this paper, a new technique is
proposed to construct the initial contour by incorporating prior
knowledge of significant corners of the object detected using the
Harris operator. This new reconstructed contour begins to deform, by
attracting the snake towards the targeted object, without missing the
corners. Experimental results with several synthetic images show the
ability of the new technique to deal with sharp corners with a high
accuracy than traditional methods.