Abstract: Annotation of a protein sequence is pivotal for the understanding of its function. Accuracy of manual annotation provided by curators is still questionable by having lesser evidence strength and yet a hard task and time consuming. A number of computational methods including tools have been developed to tackle this challenging task. However, they require high-cost hardware, are difficult to be setup by the bioscientists, or depend on time intensive and blind sequence similarity search like Basic Local Alignment Search Tool. This paper introduces a new method of assigning highly correlated Gene Ontology terms of annotated protein sequences to partially annotated or newly discovered protein sequences. This method is fully based on Gene Ontology data and annotations. Two problems had been identified to achieve this method. The first problem relates to splitting the single monolithic Gene Ontology RDF/XML file into a set of smaller files that can be easy to assess and process. Thus, these files can be enriched with protein sequences and Inferred from Electronic Annotation evidence associations. The second problem involves searching for a set of semantically similar Gene Ontology terms to a given query. The details of macro and micro problems involved and their solutions including objective of this study are described. This paper also describes the protein sequence annotation and the Gene Ontology. The methodology of this study and Gene Ontology based protein sequence annotation tool namely extended UTMGO is presented. Furthermore, its basic version which is a Gene Ontology browser that is based on semantic similarity search is also introduced.
Abstract: Text data mining is a process of exploratory data
analysis. Classification maps data into predefined groups or classes.
It is often referred to as supervised learning because the classes are
determined before examining the data. This paper describes proposed
radial basis function Classifier that performs comparative crossvalidation
for existing radial basis function Classifier. The feasibility
and the benefits of the proposed approach are demonstrated by means
of data mining problem: direct Marketing. Direct marketing has
become an important application field of data mining. Comparative
Cross-validation involves estimation of accuracy by either stratified
k-fold cross-validation or equivalent repeated random subsampling.
While the proposed method may have high bias; its performance
(accuracy estimation in our case) may be poor due to high variance.
Thus the accuracy with proposed radial basis function Classifier was
less than with the existing radial basis function Classifier. However
there is smaller the improvement in runtime and larger improvement
in precision and recall. In the proposed method Classification
accuracy and prediction accuracy are determined where the
prediction accuracy is comparatively high.
Abstract: The objective of the present work is to conduct
investigations leading to a more complete explanation of single phase
natural convective heat transfer in an enclosure with fin utilizing
nano fluids. The nano fluid used, which is composed of Aluminum
oxide nano particles in suspension of Ethylene glycol, is provided at
various volume fractions. The study is carried out numerically for a
range of Rayleigh numbers, fin heights and aspect ratio. The flow and
temperature distributions are taken to be two-dimensional. Regions
with the same velocity and temperature distributions are identified as
symmetry of sections. One half of such a rectangular region is chosen
as the computational domain taking into account the symmetry about
the fin. Transport equations are modeled by a stream functionvorticity
formulation and are solved numerically by finite-difference
schemes. Comparisons with previously published works on the basis
of special cases are done. Results are presented in the form of
streamline, vector and isotherm plots as well as the variation of local
Nusselt number along the fin under different conditions.
Abstract: In this paper by using the port-controlled Hamiltonian
(PCH) systems theory, a full-order nonlinear controlled model is first
developed. Then a nonlinear passivity-based robust adaptive control
(PBRAC) of switched reluctance motor in the presence of external
disturbances for the purpose of torque ripple reduction and
characteristic improvement is presented. The proposed controller
design is separated into the inner loop and the outer loop controller.
In the inner loop, passivity-based control is employed by using
energy shaping techniques to produce the proper switching function.
The outer loop control is employed by robust adaptive controller to
determine the appropriate Torque command. It can also overcome the
inherent nonlinear characteristics of the system and make the whole
system robust to uncertainties and bounded disturbances. A 4KW 8/6
SRM with experimental characteristics that takes magnetic saturation
into account is modeled, simulation results show that the proposed
scheme has good performance and practical application prospects.
Abstract: The recent growth of using multimedia transmission
over wireless communication systems, have challenges to protect the
data from lost due to wireless channel effect. Images are corrupted
due to the noise and fading when transmitted over wireless channel,
in wireless channel the image is transmitted block by block, Due to
severe fading, entire image blocks can be damaged. The aim of this
paper comes out from need to enhance the digital images at the
wireless receiver side. Proposed Boundary Interpolation (BI)
Algorithm using wavelet, have been adapted here used to
reconstruction the lost block in the image at the receiver depend on
the correlation between the lost block and its neighbors. New
Proposed technique by using Boundary Interpolation (BI) Algorithm
using wavelet with Pixel interleaver has been implemented. Pixel
interleaver work on distribute the pixel to new pixel position of
original image before transmitting the image. The block lost through
wireless channel is only effects individual pixel. The lost pixels at the
receiver side can be recovered by using Boundary Interpolation (BI)
Algorithm using wavelet. The results showed that the New proposed
algorithm boundary interpolation (BI) using wavelet with pixel
interleaver is better in term of MSE and PSNR.
Abstract: The objectives of this study are to determine the
effects of soil cover type on characteristics of leachates generated
from landfill lysimeters. Four lysimeters with diameter and height
of 0.15 and 3.00 m, respectively, were prepared. Three lysimeters
were filled with municipal waste and three different cover soil types
i.e. sandy loam soil, silty loam soil and clay soil while another
lysimeter was filled solely with municipal waste. The study was
conducted in the rainy season. Leachate quantities were measured
every day and leachate characteristics were determined once a week.
The cumulative leachate quantity from the lysimeter filled solely
with municipal waste was found to be around 27% higher than the
lysimeters using cover soils. There were no any differences of the
cumulative leachate amounts generated from the lysimeters using
three types of soils. The comparison of the total mass of pollutants
generated from all lysimeters showed that the lysimeter filled solely
with municipal waste generated the maximum quantities of
pollutants. Among the lysimeters using different types of soils, the
lysimeter using sandy loam soil generated the lowest amount of most
of pollutants, compared with the lysimeters using silty loam and clay
soils. It can be concluded that in term of pollutant attenuation in the
leachate, a sandy loam is the most suitable soil to be used as a cover
soil in the landfill.
Abstract: To support user mobility for a wireless network new mechanisms are needed and are fundamental, such as paging, location updating, routing, and handover. Also an important key feature is mobile QoS offered by the WATM. Several ATM network protocols should be updated to implement mobility management and to maintain the already ATM QoS over wireless ATM networks. A survey of the various schemes and types of handover is provided. Handover procedure allows guarantee the terminal connection reestablishment when it moves between areas covered by different base stations. It is useful to satisfy user radio link transfer without interrupting a connection. However, failure to offer efficient solutions will result in handover important packet loss, severe delays and degradation of QoS offered to the applications. This paper reviews the requirements, characteristics and open issues of wireless ATM, particularly with regard to handover. It introduces key aspects of WATM and mobility extensions, which are added in the fixed ATM network. We propose a flexible approach for handover management that will minimize the QoS deterioration. Functional entities of this flexible approach are discussed in order to achieve minimum impact on the connection quality when a MT crosses the BS.
Abstract: This study aims to investigate mechanical behavior of
deep-drawn cups consisting of aluminum (A1050)/ duralumin
(A2017) multi-layered clad structures with micro- and macro-scale
functional gradients. Such multi-layered clad structures are possibly
used for a new type of crash-boxes in automobiles to effectively
absorb the impact forces generated when automobiles having
collisions. The effect of heat treatments on microstructure,
compositional gradient, micro hardness in 2 and 6-layered aluminum/
duralumin clad structures, which were fabricated by hot rolling, have
been investigated. Impact compressive behavior of deep-drawn cups
consisting of such aluminum/ duralumin clad structures has been also
investigated in terms of energy absorption and maximum force.
Deep-drawn cups consisting of 6-layerd clad structures with microand
macro-scale functional gradients exhibit superior properties in
impact compressive tests.
Abstract: This paper presents part of a research into the small
scale modelling of masonry. Small scale testing of masonry has been
carried out by many authors, but few have attempted a systematic
determination of the parameters that affect masonry at a small scale.
The effect of increasing mortar strength and different sand gradings
under compression were investigated. The results show masonry
strength at small scale is influenced by increasing mortar strength and
different sand gradings.
Abstract: A study has been carried out to determine the effect of
coating two commercial glass-ionomer cements in either petroleum
jelly or wax. After coating, specimens were stored in water for 24 or
168 hours, then the coating removed and the surface examined.
Coating in wax was found to increase the surface hardness
significantly compared with the uncoated control, whereas coating
the specimens in petroleum jelly led to only a slight increase in
surface hardness. Coating in wax led to no detectable ion release
after either 24 or 168 hours, though there was some ion release after
the coating had been removed and the specimens exposed to water
for a further 24 hours. This shows that soluble species remained in
these specimens. Overall, this study confirms the idea that immature
glass-ionomers should be protected from early exposure to moisture,
and that the protection offered by petroleum jelly is only modest.
Abstract: QoS Routing aims to find paths between senders and
receivers satisfying the QoS requirements of the application which
efficiently using the network resources and underlying routing
algorithm to be able to find low-cost paths that satisfy given QoS
constraints. The problem of finding least-cost routing is known to be
NP hard or complete and some algorithms have been proposed to
find a near optimal solution. But these heuristics or algorithms either
impose relationships among the link metrics to reduce the complexity
of the problem which may limit the general applicability of the
heuristic, or are too costly in terms of execution time to be applicable
to large networks. In this paper, we analyzed two algorithms namely
Characterized Delay Constrained Routing (CDCR) and Optimized
Delay Constrained Routing (ODCR). The CDCR algorithm dealt an
approach for delay constrained routing that captures the trade-off
between cost minimization and risk level regarding the delay
constraint. The ODCR which uses an adaptive path weight function
together with an additional constraint imposed on the path cost, to
restrict search space and hence ODCR finds near optimal solution in
much quicker time.
Abstract: The purpose of this note is to obtain some properties of
(∈,∈ ∨q)- fuzzy bi-ideals in a Γ-semigroup in order to characterize
regular and intra-regular Γ-semigroups.
Abstract: Simulation of occlusal function during laboratory
material-s testing becomes essential in predicting long-term
performance before clinical usage. The aim of the study was to assess
the influence of chamfer preparation depth on failure risk of heat
pressed ceramic crowns with and without zirconia framework by
means of finite element analysis. 3D models of maxillary central
incisor, prepared for full ceramic crowns with different depths of the
chamfer margin (between 0.8 and 1.2 mm) and 6-degree tapered
walls together with the overlying crowns were generated using
literature data (Fig. 1, 2). The crowns were designed with and
without a zirconia framework with a thickness of 0.4 mm. For all
preparations and crowns, stresses in the pressed ceramic crown,
zirconia framework, pressed ceramic veneer, and dentin were
evaluated separately. The highest stresses were registered in the
dentin. The depth of the preparations had no significant influence on
the stress values of the teeth and pressed ceramics for the studied
cases, only for the zirconia framework. The zirconia framework
decreases the stress values in the veneer.
Abstract: In this paper, the use of beam search and look-ahead strategies for solving the strip packing problem (SPP) is investigated. Given a strip of fixed width W, unlimited length L, and a set of n circular pieces of known radii, the objective is to determine the minimum length of the initial strip that packs all the pieces. An augmented algorithm which combines beam search and a look-ahead strategies is proposed. The look-ahead is used in order to evaluate the nodes at each level of the tree search. The best nodes are then retained for branching. The computational investigation showed that the proposed augmented algorithm is able to improve the best known solutions of the literature on most instances used.
Abstract: Bacterial magnetic nanoparticles have great useful potential in biotechnological and biomedical applications. In this study, a liquid growth medium was modified for cultivation a fastidious magnetotactic bacterium that has been isolated from Anzali
lagoon, Iran in our previous research. These modifications include
change in vitamin, mineral, carbon sources and etcetera. In our
experience, the serum bottles and designed air-tight laboratory bottles
were used to create microaerobic conditions in order to development
of a method for scale-up experiment. This information may serve as a
guide to green chemistry based biological protocols for the synthesis
of magnetic nanoparticles with control over the chemical
composition, morphology and size.
Abstract: In this paper we canvass three case studies of unique
research partnerships between universities and schools in the wider
community. In doing so, we consider those areas of indeterminate
zones of professional practice explored by academics in their
research activities within the wider community. We discuss three
cases: an artist-in-residence program designed to engage primary
school children with new understandings about local Indigenous
Australian issues in their pedagogical and physical landscapes; an
assessment of pedagogical concerns in relation to the use of physical
space in classrooms; and the pedagogical underpinnings of a
costumed museum school program. In doing so, we engage issues of
research as playing an integral part in the development,
implementation and maintenance of academic engagements with
wider community issues.
Abstract: Internet is largely composed of textual contents and a
huge volume of digital contents gets floated over the Internet daily.
The ease of information sharing and re-production has made it
difficult to preserve author-s copyright. Digital watermarking came
up as a solution for copyright protection of plain text problem after
1993. In this paper, we propose a zero text watermarking algorithm
based on occurrence frequency of non-vowel ASCII characters and
words for copyright protection of plain text. The embedding
algorithm makes use of frequency non-vowel ASCII characters and
words to generate a specialized author key. The extraction algorithm
uses this key to extract watermark, hence identify the original
copyright owner. Experimental results illustrate the effectiveness of
the proposed algorithm on text encountering meaning preserving
attacks performed by five independent attackers.
Abstract: The aim of this paper is to discuss a low-cost methodology that can predict traffic flow conflicts and quantitatively rank crash expectancies (based on relative probability) for various traffic facilities. This paper focuses on the application of statistical distributions to model traffic flow and Monte Carlo techniques to simulate traffic and discusses how to create a tool in order to predict the possibility of a traffic crash. A low-cost data collection methodology has been discussed for the heterogeneous traffic flow that exists and a GIS platform has been proposed to thematically represent traffic flow from simulations and the probability of a crash. Furthermore, discussions have been made to reflect the dynamism of the model in reference to its adaptability, adequacy, economy, and efficiency to ensure adoption.
Abstract: In this paper a novel algorithm is proposed to merit
the accuracy of finger vein recognition. The performances of
Principal Component Analysis (PCA), Kernel Principal Component
Analysis (KPCA), and Kernel Entropy Component Analysis (KECA)
in this algorithm are validated and compared with each other in order
to determine which one is the most appropriate one in terms of finger
vein recognition.
Abstract: In hypersonic environments, the aerothermal effect
makes it difficult for the optical side windows of optical guided
missiles to withstand high heat. This produces cracking or breaking,
resulting in an inability to function. This study used computational
fluid mechanics to investigate the external cooling jet conditions of
optical side windows. The turbulent models k-ε and k-ω were
simulated. To be in better accord with actual aerothermal
environments, a thermal radiation model was added to examine
suitable amounts of external coolants and the optical window
problems of aero-thermodynamics. The simulation results indicate that
when there are no external cooling jets, because airflow on the optical
window and the tail groove produce vortices, the temperatures in these
two locations reach a peak of approximately 1600 K. When the
external cooling jets worked at 0.15 kg/s, the surface temperature of
the optical windows dropped to approximately 280 K. When adding
thermal radiation conditions, because heat flux dissipation was faster,
the surface temperature of the optical windows fell from 280 K to
approximately 260 K. The difference in influence of the different
turbulence models k-ε and k-ω on optical window surface temperature
was not significant.