Abstract: Biological sequences from different species are called or-thologs if they evolved from a sequence of a common ancestor species and they have the same biological function. Approximations of Kolmogorov complexity or entropy of biological sequences are already well known to be useful in extracting similarity information between such sequences -in the interest, for example, of ortholog detection. As is well known, the exact Kolmogorov complexity is not algorithmically computable. In prac-tice one can approximate it by computable compression methods. How-ever, such compression methods do not provide a good approximation to Kolmogorov complexity for short sequences. Herein is suggested a new ap-proach to overcome the problem that compression approximations may notwork well on short sequences. This approach is inspired by new, conditional computations of Kolmogorov entropy. A main contribution of the empir-ical work described shows the new set of entropy-based machine learning attributes provides good separation between positive (ortholog) and nega-tive (non-ortholog) data - better than with good, previously known alter-natives (which do not employ some means to handle short sequences well).Also empirically compared are the new entropy based attribute set and a number of other, more standard similarity attributes sets commonly used in genomic analysis. The various similarity attributes are evaluated by cross validation, through boosted decision tree induction C5.0, and by Receiver Operating Characteristic (ROC) analysis. The results point to the conclu-sion: the new, entropy based attribute set by itself is not the one giving the best prediction; however, it is the best attribute set for use in improving the other, standard attribute sets when conjoined with them.
Abstract: The work presents a development of EN338 strength classes for Strombosia pustulata, Pterygotama crocarpa, Nauclea diderrichii and Entandrophragma cyclindricum Nigerian timber species. The specimens for experimental measurements were obtained from the timber-shed at the famous Panteka market in Kaduna in the northern part of Nigeria. Laboratory experiments were conducted to determine the physical and mechanical properties of the selected timber species in accordance with EN 13183-1 and ASTM D193. The mechanical properties were determined using three point bending test. The generated properties were used to obtain the characteristic values of the material properties in accordance with EN384. The selected timber species were then classified according to EN 338. Strombosia pustulata, Pterygotama crocarpa, Nauclea diderrichii and Entandrophragma cyclindricum were assigned to strength classes D40, C14, D40 and D24 respectively. Other properties such as tensile and compressive strengths parallel and perpendicular to grains, shear strength as well as shear modulus were obtained in accordance with EN 338.
Abstract: In this study, a high accuracy protein-protein interaction
prediction method is developed. The importance of the proposed
method is that it only uses sequence information of proteins while
predicting interaction. The method extracts phylogenetic profiles of
proteins by using their sequence information. Combining the phylogenetic
profiles of two proteins by checking existence of homologs
in different species and fitting this combined profile into a statistical
model, it is possible to make predictions about the interaction status
of two proteins.
For this purpose, we apply a collection of pattern recognition
techniques on the dataset of combined phylogenetic profiles of protein
pairs. Support Vector Machines, Feature Extraction using ReliefF,
Naive Bayes Classification, K-Nearest Neighborhood Classification,
Decision Trees, and Random Forest Classification are the methods
we applied for finding the classification method that best predicts
the interaction status of protein pairs. Random Forest Classification
outperformed all other methods with a prediction accuracy of 76.93%
Abstract: A cross sectional study design and standard
microbiological procedures were used to determine the prevalence
and antimicrobial susceptibility patterns of Escherichia coli,
Salmonella enterica serovar typhimurium and Vibrio cholerae O1
isolated from water and two fish species Rastrineobola argentea and
Oreochromis niloticus collected from fish landing beaches and
markets in the Lake Victoria Basin of western Kenya. Out of 162
samples analyzed, 133 (82.1%) were contaminated, with S.
typhimurium as the most prevalent (49.6%), followed by E. coli
(46.6%), and lastly V. cholerae (2.8%). All the bacteria isolates were
sensitive to ciprofloxacin. E. coli isolates were resistant to ampicillin,
tetracycline, cotrimoxazole, chloramphenical and gentamicin while
S. typhimurium isolates exhibited resistance to ampicillin,
tetracycline, and cotrimoxazole. The V. cholerae O1 isolates were
resistant to tetracycline and ampicillin. The high prevalence of drug
resistant enteric bacteria in water and fish from the study region
needs public health intervention from the local government.
Abstract: The comparative analysis of different taxonomic
groups of microorganisms isolated from dark chernozem soils under
different agricultures (alfalfa, melilot, sainfoin, soybean, rapeseed) at
Almaty region of Kazakhstan was conducted. It was shown that the
greatest number of micromycetes was typical to the soil planted with
alfalfa and canola. Species diversity of micromycetes markedly
decreases as it approaches the surface of the root, so that the species
composition in the rhizosphere is much more uniform than in the
virgin soil. Promising strains of microscopic fungi and yeast with
plant growth-promoting activity to agricultures were selected. Among
the selected fungi there are representatives of Penicillium bilaiae,
Trichoderma koningii, Fusarium equiseti, Aspergillus ustus. The
highest rates of growth and development of seedlings of plants
observed under the influence of yeasts Aureobasidium pullulans,
Rhodotorula mucilaginosa, Metschnikovia pulcherrima. Using
molecular - genetic techniques confirmation of the identification
results of selected micromycetes was conducted.
Abstract: Phaseolus coccineus L. is the third most important
cultivated Phaseolus species in the world. It is widely grown in
Latvia due to its earliness, good taste and uniform and qualitative
yield. Experiments were carried out in the laboratories of Department
of Food Technology and Agronomical Analysis Scientific Laboratory
at Latvia Universityof Agriculture. Beans (Phaseolus coccineus L.)
crude protein, crude ash content as well as colour measurements were
analyzed. Results show, that brown coloured beans have less crude
protein content than others, and ash content have significant
differences.
Abstract: To create a solution for a specific problem in machine
learning, the solution is constructed from the data or by use a search
method. Genetic algorithms are a model of machine learning that can
be used to find nearest optimal solution. While the great advantage of
genetic algorithms is the fact that they find a solution through
evolution, this is also the biggest disadvantage. Evolution is inductive,
in nature life does not evolve towards a good solution but it evolves
away from bad circumstances. This can cause a species to evolve into
an evolutionary dead end. In order to reduce the effect of this
disadvantage we propose a new a learning tool (criteria) which can be
included into the genetic algorithms generations to compare the
previous population and the current population and then decide
whether is effective to continue with the previous population or the
current population, the proposed learning tool is called as Keeping
Efficient Population (KEP). We applied a GA based on KEP to the
production line layout problem, as a result KEP keep the evaluation
direction increases and stops any deviation in the evaluation.
Abstract: In this article, models based on quantitative analysis,
physical geometry and regression analysis are established, by using
analytic hierarchy process analysis, fuzzy cluster analysis, fuzzy
photographic and data fitting. The reasons of various leaf shapes
among different species and the differences between the leaf shapes on
same tree have been solved by using software, such as Eviews, VB and
Matlab. We also successfully estimate the leaf mass of a tree and the
correlation with the tree profile.
Abstract: In the study of chironomids in Armenia several
species of Orthocladiinae subfamily of Cricotopus genus,
Diamesinae subfamily of Diamesa genus, and Chironominae
subfamily of Chironomus genus, have been identified. In the
Cricotopus genus two sibling species were found, not distinguishable
by larval morphological features, but clearly distinct cytogenetically.
Abstract: The development of the poultry industry in Albania is mainly based on the existence of intensive modern farms with huge capacities, which often are mixed with other forms. Colibacillosis is commonly displayed regardless of the type of breeding, delivering high mortality in poultry industry. The mechanisms with which pathogen enterobacters are able to cause the infection in poultry are not yet clear. The routine diagnose in the field, followed by isolation of E. coli and species of Salmonella genres in reference laboratories cannot lead in classification or full recognition of circulative strains in a territory, if it is not performed a differentiation among the present microorganisms in intensive farms and those in rural areas. In this study were isolated 1.496 strains of E. coli and 378 Salmonella spp. This study, presents distribution of poultry pathogenosity of E.coli and Salmonella spp., based on the usage of innovative diagnostic methods.
Abstract: Dioscorea species or commonly named as yam is
reported to be one of the major food sources worldwide. This
ethnobotanical study was conducted to document local knowledge
and potentials of DioscoreahispidaDennst. and to investigate and
record its distribution in three districts of Terengganu. Information
was gathered from 23 villagers from three districts of Besut, Marang
and Setiu by using semi-structured questionnaire. The villagers were
randomly selected and no appointment was made prior to the visits.
For distribution, the location of Dioscoreahispida was recorded by
using the Global Positioning System (GPS). The villagers identified
Dioscoreahispida or locally named ubigadong by looking at the
physical characteristics that include its leaf shape, stem and the color
of the tuber-s flesh. The villagers used Dioscoreahispida in many
ways in their life such as for food, medicinal purposes and fish
poison.
Abstract: Water quality and freshwater fish diversity from nine
waterfalls at Khao Luang National Park, Thailand was examined.
Streams were shallow, fast flowing with clear water and rocky and
sandy substrate. The mean water quality of waterfalls at Khao Luang
National Park were as following pH 7.50, air temperature 24.27 °C,
water temperature 26.37 °C, dissolved oxygen 7.88 mg/l, hardness
4.44-21.33 mg/l, alkalinity 3.55-11.88 mg/(as CaCO3). Twenty fish
species were found at Khao Luang National Park belonging to nine
families. A cluster analysis of water quality at Khao Luang National
Park revealed that waterfalls at Khao Luang National Park were
divided into two groups: A and B. Group A composed of two
waterfalls (i.e. Aie Kaew and Wangmaipak) that flew to the Gulf of
Thailand side. Group B composed of seven waterfalls (i.e. Promlok,
Kalom, Nuafa, Suankun, Soidaw, Suanhai, and Thapae) that flew to
the Andaman Sea side (Fig. 2) .The Cyprinids represented the major
species in all the waterfalls comprising of 45%.
Abstract: Air infiltration in mass scale industrial applications of
bio char production is inevitable. The presence of oxygen during the
carbonization process is detrimental to the production of biochar yield
and properties. The experiment was carried out on several wood
species in a fixed-bed pyrolyser under various fractions of oxygen
ranging from 0% to 11% by varying nitrogen and oxygen composition
in the pyrolysing gas mixtures at desired compositions. The bed
temperature and holding time were also varied. Process optimization
was carried out by Response Surface Methodology (RSM) by
employing Central Composite Design (CCD) using Design Expert 6.0
Software. The effect of oxygen ratio and holding time on biochar yield
within the range studied were statistically significant. From the
analysis result, optimum condition of 15.2% biochar yield of
mangrove wood was predicted at pyrolysis temperature of 403 oC,
oxygen percentage of 2.3% and holding time of two hours. This
prediction agreed well with the experiment finding of 15.1% biochar
yield.
Abstract: Seasonal survey of freshwater snails in different water
courses in Egypt during two successive years included 13 snail
species. They represented by Biomphalaria alexandrina, Bulinus
truncatus, Physa acuta, Helisoma duryi, Lymnaea natalensis,
Planorbis pantries, Cleopatra bulimoides, Lanistes carinatus,
Bellamya unicolor, Melanoides tuberculata, Theodoxus niloticus,
Succinia cleopatra and Valvata nilotica. B. alexandrina was most
abundant during autumn and spring represented by 26and14
snails/site, respectively. B. truncatus was most abundant during
winter (7.7and3.6snails/site) of the two years, respectively. L.
natalensis was represented by 7snails/site in summer. The tolerance
of different snail species to the chemical elements was determined
seasonally and correlated to their abundance. In spring, autumn and
winter, B. alexandrina was significantly found to live under the
highest level of Pb, Cd,Cu, Na, K and Ca concentrations than the
other species (p
Abstract: This work presents the experimental results obtained
at a pilot plant which works with a slow, wet and catalytic pyrolysis
process of dry fowl manure. This kind of process mainly consists in
the cracking of the organic matrix and in the following reaction of
carbon with water, which is either already contained in the organic
feed or added, to produce carbon monoxide and hydrogen. Reactions
are conducted in a rotating reactor maintained at a temperature of
500°C; the required amount of water is about 30% of the dry organic
feed. This operation yields a gas containing about 59% (on a volume
basis) of hydrogen, 17% of carbon monoxide and other products such
as light hydrocarbons (methane, ethane, propane) and carbon
monoxide in lesser amounts. The gas coming from the reactor can be
used to produce not only electricity, through internal combustion
engines, but also heat, through direct combustion in industrial
boilers. Furthermore, as the produced gas is devoid of both solid
particles and pollutant species (such as dioxins and furans), the
process (in this case applied to fowl manure) can be considered as an
optimal way for the disposal and the contemporary energetic
valorization of organic materials, in such a way that is not damaging
to the environment.
Abstract: The objective of this research was to identify the
vegetation-soil relationships in Nodushan arid rangelands of Yazd. 5
sites were selected for measuring the cover of plant species and soil
attributes. Soil samples were taken in 0-10 and 10-80 cm layers. The
species studied were Salsola tomentosa, Salsola arbuscula, Peganum
harmala, Zygophylum eurypterum and Eurotia ceratoides. Canonical
correspondence analysis (CCA) was used to analyze the data. Based
on the CCA results, 74.9 % of vegetation-soil variation was explained
by axis 1-3. Axis 1, 2 and 3 accounted for 27.2%, 24.9 % and 22.8%
of variance respectively. Correlation between axis 1, 2, 3 and speciesedaphic
variables were 0.995, 0.989, 0.981 respectively. Soil texture,
lime, salinity and organic matter significantly influenced the
distribution of these plant species. Determination of soil-vegetation
relationships will be useful for managing and improving rangelands
in arid and semi arid environments.
Abstract: This study shows palynomorphological description of
pollen grains of Lamium garganicum, species of the family Labiatae.
Fresh material of this plant is taken in Mount Llogara, in Albania. By
comparison made between palinomorphological characteristics of
pollen grains of Lamium garganicum with those of Lamium
maculatum and Lamium purpureum, showed that granules have
similarities in the number of furrows. The pollen grains of Lamium
garganicum were larger in length and width than those of Lamium
maculatum and almost equal with those of Lamium purpureum.
Furrows are longer than those of pollen grains in Lamium maculatum
and shorter than those of Lamium purpureum. The layer of exine of
Lamium garganicum was thinner than that of two others. The
sculpture of exine was fine reticulate, where reticulas were uniform
whereas in Lamium purpureum was verrucate, with small verrucae; in
Lamium maculatum was reticulate.
Abstract: Anchovy (Engraulis Encrasicholus) and sardine
(Sardina Pilchardus) are blue fishes linked to our alimentary tradition
of Mediterranean. In our work, particularly, we tested for the first
time physical and enzymatic methods to verify the freshness of
species of blue fish, anchovy and sardine of Mediterranean. In
connection with to the lowering of the pH after post-mortem stage we
assisted to a increase in proteolytic activity of calpaine and catpsine.
Already after 2 h in post-mortem there was a significant increase.
Abstract: The prospective analysis is presented as an important tool to identify the most relevant opportunities and needs in research and development from planned interventions in innovation systems. This study chose Phyllanthus niruri, known as "stone break" to describe the knowledge about the specie, by using biotechnological forecasting through the software Vantage Point. It can be seen a considerable increase in studies on Phyllanthus niruri in recent years and that there are patents about this plant since twenty-five years ago. India was the country that most carried out research on the specie, showing interest, mainly in studies of hepatoprotection, antioxidant and anti-cancer activities. Brazil is in the second place, with special interest for anti-tumor studies. Given the identification of the Brazilian groups that exploit the species it is possible to mediate partnerships and cooperation aiming to help on the implementing of the Program of Herbal medicines (phytotherapics) in Brazil.
Abstract: Hypersonic flows around spatial vehicles during their
reentry phase in planetary atmospheres are characterized by intense
aerothermal phenomena. The aim of this work is to analyze high
temperature flows around an axisymmetric blunt body taking into
account chemical and vibrational non-equilibrium for air mixture
species. For this purpose, a finite volume methodology is employed
to determine the supersonic flow parameters around the axisymmetric
blunt body, especially at the stagnation point and along the wall of
spacecraft for several altitudes. This allows the capture shock wave
before a blunt body placed in supersonic free stream. The numerical
technique uses the Flux Vector Splitting method of Van Leer. Here,
adequate time stepping parameter, along with CFL coefficient and
mesh size level are selected to ensure numerical convergence, sought
with an order of 10-8