Abstract: Understanding the cell's large-scale organization is an interesting task in computational biology. Thus, protein-protein interactions can reveal important organization and function of the cell. Here, we investigated the correspondence between protein interactions and function for the yeast. We obtained the correlations among the set of proteins. Then these correlations are clustered using both the hierarchical and biclustering methods. The detailed analyses of proteins in each cluster were carried out by making use of their functional annotations. As a result, we found that some functional classes appear together in almost all biclusters. On the other hand, in hierarchical clustering, the dominancy of one functional class is observed. In the light of the clustering data, we have verified some interactions which were not identified as core interactions in DIP and also, we have characterized some functionally unknown proteins according to the interaction data and functional correlation. In brief, from interaction data to function, some correlated results are noticed about the relationship between interaction and function which might give clues about the organization of the proteins, also to predict new interactions and to characterize functions of unknown proteins.
Abstract: Radio wave propagation on the road surface is a major
problem on wireless sensor network for traffic monitoring. In this
paper, we compare receiving signal strength on two scenarios 1) an
empty road and 2) a road with a vehicle. We investigate the effect of
antenna polarization and antenna height to the receiving signal
strength. The transmitting antenna is installed on the road surface.
The receiving signal is measured 360 degrees around the transmitting
antenna with the radius of 2.5 meters. Measurement results show the
receiving signal fluctuation around the transmitting antenna in both
scenarios. Receiving signal with vertical polarization antenna results
in higher signal strength than horizontal polarization antenna. The
optimum antenna elevation is 1 meter for both horizon and vertical
polarizations with the vehicle on the road. In the empty road, the
receiving signal level is unvarying with the elevation when the
elevation is greater than 1.5 meters.
Abstract: This paper is a numerical investigation of a laminar
isothermal plane two dimensional wall jet. Special attention has been
paid to the effect of the inlet conditions at the nozzle exit on the
hydrodynamic and thermal characteristics of the flow. The
behaviour of various fluids evolving in both forced and mixed
convection regimes near a vertical plate plane is carried out. The
system of governing equations is solved with an implicit finite
difference scheme. For numerical stability we use a staggered non
uniform grid. The obtained results show that the effect of the Prandtl
number is significant in the plume region in which the jet flow is
governed by buoyant forces. Further for ascending X values, the
buoyancy forces become dominating, and a certain agreement
between the temperature profiles are observed, which shows that the
velocity profile has no longer influence on the wall temperature
evolution in this region. Fluids with low Prandtl number warm up
more importantly, because for such fluids the effect of heat diffusion
is higher.
Abstract: This paper presents a spectroscopic study on doping
of Vanadyl pathalocyanine (VOPc) by [6,6]-phenyl C61 butyric acid
methyl ester (PCBM). The films are characterized by UV/Vis/NIR
spectroscopy. A drastic increase in the absorption coefficient has
been observed with increasing dopant concentration. Optical
properties of VOPc:PCBM films deposited by spin coating technique
were studied in detail. Optical band gap decreased with the PCBM
incorporation in the VOPc film. Optical band gap calculated from the
absorption spectra decreased from 3.32 eV to 3.26 eV with a
variation of 0–75 % of PCBM concentration in the VOPC films.
Abstract: The study on the tree growth for four species groups of commercial timber in Koh Kong province, Cambodia-s tropical rainforest is described. The simulation for these four groups had been successfully developed in the 5-year interval through year-60. Data were obtained from twenty permanent sample plots in the duration of thirteen years. The aim for this study was to develop stand table simulation system of tree growth by the species group. There were five steps involved in the development of the tree growth simulation: aggregate the tree species into meaningful groups by using cluster analysis; allocate the trees in the diameter classes by the species group; observe the diameter movement of the species group. The diameter growth rate, mortality rate and recruitment rate were calculated by using some mathematical formula. Simulation equation had been created by combining those parameters. Result showed the dissimilarity of the diameter growth among species groups.
Abstract: Present wireless communication demands compact and intelligent devices with multitasking capabilities at affordable cost. The focus in the presented paper is on a dual band antenna for wireless communication with the capability of operating at two frequency bands with same structure. Two resonance frequencies are observed with the second operation band at 4.2GHz approximately three times the first resonance frequency at 1.5GHz. Structure is simple loop of microstrip line with characteristic impedance 50 ohms. The proposed antenna is designed using defective ground structure (DGS) and shows the nearly one third reductions in size as compared to without DGS. This antenna was simulated on electromagnetic (EM) simulation software and fabricated using microwave integrated circuit technique on RT-Duroid dielectric substrate (εr= 2.22) of thickness (H=15 mils). The designed antenna was tested on automatic network analyzer and shows the good agreement with simulated results. The proposed structure is modeled into an equivalent electrical circuit and simulated on circuit simulator. Subsequently, theoretical analysis was carried out and simulated. The simulated, measured, equivalent circuit response, and theoretical results shows good resemblance. The bands of operation draw many potential applications in today’s wireless communication.
Abstract: Inconel 718, a nickel based super-alloy is an
extensively used alloy, accounting for about 50% by weight of
materials used in an aerospace engine, mainly in the gas turbine
compartment. This is owing to their outstanding strength and
oxidation resistance at elevated temperatures in excess of 5500 C.
Machining is a requisite operation in the aircraft industries for the
manufacture of the components especially for gas turbines. This
paper is concerned with optimization of the surface roughness when
turning Inconel 718 with cermet inserts. Optimization of turning
operation is very useful to reduce cost and time for machining. The
approach is based on Response Surface Method (RSM). In this work,
second-order quadratic models are developed for surface roughness,
considering the cutting speed, feed rate and depth of cut as the cutting
parameters, using central composite design. The developed models
are used to determine the optimum machining parameters. These
optimized machining parameters are validated experimentally, and it
is observed that the response values are in reasonable agreement with
the predicted values.
Abstract: 16-Mercaptohexadecanoic acid (MHDA) and tripeptide glutathione conjugated with gold nanoparticles (Au-NPs) are characterized by Fourier Transform InfaRared (FTIR) spectroscopy combined with Surface-enhanced Raman scattering (SERS) spectroscopy. Surface Plasmon Resonance (SPR) technique based on FTIR spectroscopy has become an important tool in biophysics, which is perspective for the study of organic compounds. FTIR-spectra of MHDA shows the line at 2500 cm-1 attributed to thiol group which is modified by presence of Au-NPs, suggesting the formation of bond between thiol group and gold. We also can observe the peaks originate from characteristic chemical group. A Raman spectrum of the same sample is also promising. Our preliminary experiments confirm that SERS-effect takes place for MHDA connected with Au-NPs and enable us to detected small number (less than 106 cm-2) of MHDA molecules. Combination of spectroscopy methods: FTIR and SERS – enable to study optical properties of Au- NPs and immobilized bio-molecules in context of a bio-nano-sensors.
Abstract: The mixing behaviors of dry and wet granular
materials in gas fluidized bed systems were investigated
computationally using the combined Computational Fluid Dynamics
and Discrete Element Method (CFD-DEM). Dry particles were
observed to mix fairly rapidly during the fluidization process due to
vigorous relative motions between particles induced by the flow of
gas. In contrast, due to the presence of strong cohesive forces arising
from capillary liquid bridges between wet particles, the mixing
efficiencies of wet granular materials under similar operating
conditions were observed to be reduced significantly.
Abstract: In this paper, the performance of two adaptive
observers applied to interconnected systems is studied. The
nonlinearity of systems can be written in a fractional form. The first
adaptive observer is an adaptive sliding mode observer for a Lipchitz
nonlinear system and the second one is an adaptive sliding mode
observer having a filtered error as a sliding surface. After comparing
their performances throughout the inverted pendulum mounted on a
car system, it was shown that the second one is more robust to
estimate the state.
Abstract: Atmospheric stability plays the most important role in
the transport and dispersion of air pollutants. Different methods are
used for stability determination with varying degrees of complexity.
Most of these methods are based on the relative magnitude of
convective and mechanical turbulence in atmospheric motions.
Richardson number, Monin-Obukhov length, Pasquill-Gifford
stability classification and Pasquill–Turner stability classification, are
the most common parameters and methods. The Pasquill–Turner
Method (PTM), which is employed in this study, makes use of
observations of wind speed, insolation and the time of day to classify
atmospheric stability with distinguishable indices. In this study, a
model is presented to determination of atmospheric stability
conditions using PTM. As a case study, meteorological data of
Mehrabad station in Tehran from 2000 to 2005 is applied to model.
Here, three different categories are considered to deduce the pattern
of stability conditions. First, the total pattern of stability classification
is obtained and results show that atmosphere is 38.77%, 27.26%,
33.97%, at stable, neutral and unstable condition, respectively. It is
also observed that days are mostly unstable (66.50%) while nights are
mostly stable (72.55%). Second, monthly and seasonal patterns are
derived and results indicate that relative frequency of stable
conditions decrease during January to June and increase during June
to December, while results for unstable conditions are exactly in
opposite manner. Autumn is the most stable season with relative
frequency of 50.69% for stable condition, whilst, it is 42.79%,
34.38% and 27.08% for winter, summer and spring, respectively.
Hourly stability pattern is the third category that points out that
unstable condition is dominant from approximately 03-15 GTM and
04-12 GTM for warm and cold seasons, respectively. Finally,
correlation between atmospheric stability and CO concentration is
achieved.
Abstract: In the current Grid environment, efficient workload
management presents a significant challenge, for which there are
exorbitant de facto standards encompassing resource discovery,
brokerage, and data transfer, among others. In addition, the real-time
resource status, essential for an optimal resource allocation strategy,
is often not readily accessible. To address these issues and provide a
cleaner abstraction of the Grid with the potential of generalizing into
arbitrary resource-sharing environment, this paper proposes a new
Condor-based pilot mechanism applied in the PanDA architecture,
PanDA-PF WMS, with the goal of providing a more generic yet
efficient resource allocating strategy. In this architecture, the PanDA
server primarily acts as a repository of user jobs, responding to pilot
requests from distributed, remote resources. Scheduling decisions are
subsequently made according to the real-time resource information
reported by pilots. Pilot Factory is a Condor-inspired solution for a
scalable pilot dissemination and effectively functions as a resource
provisioning mechanism through which the user-job server, PanDA,
reaches out to the candidate resources only on demand.
Abstract: Recently, there are significant improvements in the
capabilities of mobile devices; rendering large terrain is tedious
because of the constraint in resources of mobile devices. This
paper focuses on the implementation of terrain rendering on
mobile device to observe some issues and current constraints
occurred. Experiments are performed using two datasets with
results based on rendering speed and appearance to ascertain both
the issues and constraints. The result shows a downfall of frame
rate performance because of the increase of triangles. Since the
resolution between computer and mobile device is different, the
terrain surface on mobile device looks more unrealistic compared
to on a computer. Thus, more attention in the development of
terrain rendering on mobile devices is required. The problems
highlighted in this paper will be the focus of future research and
will be a great importance for 3D visualization on mobile device.
Abstract: In this research, a biofiltration process to remove
ammonia gas from gas stream using agricultural residue biofilter
medias is studied. The experiments were conducted in laboratoryscale
biofilter. The biofilter medias were a mixture of manure
fertilizer and bagasse at various ratios i.e., 1:3, 1:5 and 1:7. The
experiments were performed for a period of 40 days. The empty bed
retention time (EBRT) is 78s. The moisture content of biofilter media
was maintained at 45-60% using water. The results showed that the
agricultural residues (manure fertilizer and bagasse) are suitable as
biofilter media for ammonia gas removal in biofiltration process.
The maximum efficiency of ammonia gas removal is observed
from the 1:5 of manure fertilizer: bagasse ratio at 89.93%. The
biofiltration is more effective at low ammonia gas concentration. In
addition, the mixture ratio of biofilter media is not a significant factor
in biofiltration operation while the most significant factor for
biofiltration operation is the inlet ammonia gas concentration.
Abstract: e-mail has become an important means of electronic
communication but the viability of its usage is marred by Unsolicited
Bulk e-mail (UBE) messages. UBE consists of many types
like pornographic, virus infected and 'cry-for-help' messages as well
as fake and fraudulent offers for jobs, winnings and medicines. UBE
poses technical and socio-economic challenges to usage of e-mails.
To meet this challenge and combat this menace, we need to
understand UBE. Towards this end, the current paper presents a
content-based textual analysis of more than 2700 body enhancement
medicinal UBE. Technically, this is an application of Text Parsing
and Tokenization for an un-structured textual document and we
approach it using Bag Of Words (BOW) and Vector Space Document
Model techniques. We have attempted to identify the most
frequently occurring lexis in the UBE documents that advertise
various products for body enhancement. The analysis of such top
100 lexis is also presented. We exhibit the relationship between
occurrence of a word from the identified lexis-set in the given UBE
and the probability that the given UBE will be the one advertising for
fake medicinal product. To the best of our knowledge and survey of
related literature, this is the first formal attempt for identification of
most frequently occurring lexis in such UBE by its textual analysis.
Finally, this is a sincere attempt to bring about alertness against and
mitigate the threat of such luring but fake UBE.
Abstract: Finding the shortest path between two positions is a
fundamental problem in transportation, routing, and communications
applications. In robot motion planning, the robot should pass around
the obstacles touching none of them, i.e. the goal is to find a
collision-free path from a starting to a target position. This task has
many specific formulations depending on the shape of obstacles,
allowable directions of movements, knowledge of the scene, etc.
Research of path planning has yielded many fundamentally different
approaches to its solution, mainly based on various decomposition
and roadmap methods. In this paper, we show a possible use of
visibility graphs in point-to-point motion planning in the Euclidean
plane and an alternative approach using Voronoi diagrams that
decreases the probability of collisions with obstacles. The second
application area, investigated here, is focused on problems of finding
minimal networks connecting a set of given points in the plane using
either only straight connections between pairs of points (minimum
spanning tree) or allowing the addition of auxiliary points to the set
to obtain shorter spanning networks (minimum Steiner tree).
Abstract: In built-up structures, one of the effective ways of
dissipating unwanted vibration is to exploit the occurrence of slip at
the interfaces of structural laminates. The present work focuses on
the dynamic analysis of welded structures. A mathematical
formulation has been developed for the mechanism of slip damping
in layered and welded mild steel beams with unequal thickness
subjected to both periodic and non-periodic forces. It is observed that
a number of vital parameters such as; thickness ratio, pressure
distribution characteristics, relative slip and kinematic co-efficient of
friction at the interfaces, nature of exciting forces, length and
thickness of the beam specimen govern the damping characteristics of
these structures. Experimental verification has been carried out to
validate the analysis and study the effect of these parameters. The
developed damping model for the structure is found to be in fairly
good agreement with the measured data. Finally, the results of the
analysis are discussed and rationalized.
Abstract: This paper presents an effective traffic lights detection
method at the night-time. First, candidate blobs of traffic lights are
extracted from RGB color image. Input image is represented on the
dominant color domain by using color transform proposed by Ruta,
then red and green color dominant regions are selected as candidates.
After candidate blob selection, we carry out shape filter for noise
reduction using information of blobs such as length, area, area of
boundary box, etc. A multi-class classifier based on SVM (Support
Vector Machine) applies into the candidates. Three kinds of features
are used. We use basic features such as blob width, height, center
coordinate, area, area of blob. Bright based stochastic features are also
used. In particular, geometric based moment-s values between
candidate region and adjacent region are proposed and used to improve
the detection performance. The proposed system is implemented on
Intel Core CPU with 2.80 GHz and 4 GB RAM and tested with the
urban and rural road videos. Through the test, we show that the
proposed method using PF, BMF, and GMF reaches up to 93 % of
detection rate with computation time of in average 15 ms/frame.
Abstract: Fuzzy random variables have been introduced as an imprecise concept of numeric values for characterizing the imprecise knowledge. The descriptive parameters can be used to describe the primary features of a set of fuzzy random observations. In fuzzy environments, the expected values are usually represented as fuzzy-valued, interval-valued or numeric-valued descriptive parameters using various metrics. Instead of the concept of area metric that is usually adopted in the relevant studies, the numeric expected value is proposed by the concept of distance metric in this study based on two characters (fuzziness and randomness) of FRVs. Comparing with the existing measures, although the results show that the proposed numeric expected value is same with those using the different metric, if only triangular membership functions are used. However, the proposed approach has the advantages of intuitiveness and computational efficiency, when the membership functions are not triangular types. An example with three datasets is provided for verifying the proposed approach.
Abstract: This paper features the proposed modeling and design
of a Robust Decentralized Periodic Output Feedback (RDPOF)
control technique for the active vibration control of smart flexible
multimodel Euler-Bernoulli cantilever beams for a multivariable
(MIMO) case by retaining the first 6 vibratory modes. The beam
structure is modeled in state space form using the concept of
piezoelectric theory, the Euler-Bernoulli beam theory and the Finite
Element Method (FEM) technique by dividing the beam into 4 finite
elements and placing the piezoelectric sensor / actuator at two finite
element locations (positions 2 and 4) as collocated pairs, i.e., as
surface mounted sensor / actuator, thus giving rise to a multivariable
model of the smart structure plant with two inputs and two outputs.
Five such multivariable models are obtained by varying the
dimensions (aspect ratios) of the aluminum beam, thus giving rise to
a multimodel of the smart structure system. Using model order
reduction technique, the reduced order model of the higher order
system is obtained based on dominant eigen value retention and the
method of Davison. RDPOF controllers are designed for the above 5
multivariable-multimodel plant. The closed loop responses with the
RDPOF feedback gain and the magnitudes of the control input are
observed and the performance of the proposed multimodel smart
structure system with the controller is evaluated for vibration control.