Abstract: Predicting protein-protein interactions represent a key step in understanding proteins functions. This is due to the fact that proteins usually work in context of other proteins and rarely function alone. Machine learning techniques have been applied to predict protein-protein interactions. However, most of these techniques address this problem as a binary classification problem. Although it is easy to get a dataset of interacting proteins as positive examples, there are no experimentally confirmed non-interacting proteins to be considered as negative examples. Therefore, in this paper we solve this problem as a one-class classification problem using one-class support vector machines (SVM). Using only positive examples (interacting protein pairs) in training phase, the one-class SVM achieves accuracy of about 80%. These results imply that protein-protein interaction can be predicted using one-class classifier with comparable accuracy to the binary classifiers that use artificially constructed negative examples.
Abstract: The chatter is one of the major limitations of the productivity in the ball end milling process. It affects the surface roughness, the dimensional accuracy and the tool life. The aim of this research is to propose the new system to detect the chatter during the ball end milling process by using the wavelet transform. The proposed method is implemented on the 5-axis CNC machining center and the new three parameters are introduced from three dynamic cutting forces, which are calculated by taking the ratio of the average variances of dynamic cutting forces to the absolute variances of themselves. It had been proved that the chatter can be easier to detect during the in-process cutting by using the new parameters which are proposed in this research. The experimentally obtained results showed that the wavelet transform can provide the reliable results to detect the chatter under various cutting conditions.
Abstract: The significant effects of the interactions between the
system boundaries and the near wall molecules in miniaturized
gaseous devices lead to the formation of the Knudsen layer in which
the Navier-Stokes-Fourier (NSF) equations fail to predict the correct
associated phenomena. In this paper, the well-known lattice
Boltzmann method (LBM) is employed to simulate the fluid flow and
heat transfer processes in rarefied gaseous micro media. Persuaded
by the problematic deficiency of the LBM in capturing the Knudsen
layer phenomena, present study tends to concentrate on the effective
molecular mean free path concept the main essence of which is to
compensate the incapability of this mesoscopic method in dealing
with the momentum and energy transport within the above mentioned
kinetic boundary layer. The results show qualitative and quantitative
accuracy comparable to the solutions of the linearized Boltzmann
equation or the DSMC data for the Knudsen numbers of O (1) .
Abstract: A hybrid learning automata-genetic algorithm (HLGA) is proposed to solve QoS routing optimization problem of next generation networks. The algorithm complements the advantages of the learning Automato Algorithm(LA) and Genetic Algorithm(GA). It firstly uses the good global search capability of LA to generate initial population needed by GA, then it uses GA to improve the Quality of Service(QoS) and acquiring the optimization tree through new algorithms for crossover and mutation operators which are an NP-Complete problem. In the proposed algorithm, the connectivity matrix of edges is used for genotype representation. Some novel heuristics are also proposed for mutation, crossover, and creation of random individuals. We evaluate the performance and efficiency of the proposed HLGA-based algorithm in comparison with other existing heuristic and GA-based algorithms by the result of simulation. Simulation results demonstrate that this paper proposed algorithm not only has the fast calculating speed and high accuracy but also can improve the efficiency in Next Generation Networks QoS routing. The proposed algorithm has overcome all of the previous algorithms in the literature.
Abstract: In this paper, applying He-s energy balance method to determine frequency formulation relations of nonlinear oscillators with discontinuous term or fractional potential. By calculation and computer simulations, compared with the exact solutions show that the results obtained are of high accuracy.
Abstract: An electrical apparatus for measuring moisture
content was developed by our laboratory and uses dependence of
electrical properties on water content in studied material. Error
analysis of the apparatus was run by measuring different volumes of
water in a simplified specimen, i.e. hollow plexiglass block, in order
to avoid as many side-effects as possible. Obtained data were
processed using both basic and advanced statistics and results were
compared with each other. The influence of water content on
accuracy of measured data was studied as well as the influence of
variation of apparatus' proper arrangement or factual methodics of its
usage. The overall coefficient of variation was 4%. There was no
trend found in results of error dependence on water content.
Comparison with current surveys led to a conclusion, that the studied
apparatus can be used for indirect measurement of water content in
porous materials, with expectable error and under known conditions.
Factual experiments with porous materials are not involved, but are
currently under investigation.
Abstract: In this paper, the dam-reservoir interaction is
analyzed using a finite element approach. The fluid is assumed to be
incompressible, irrotational and inviscid. The assumed boundary
conditions are that the interface of the dam and reservoir is vertical
and the bottom of reservoir is rigid and horizontal. The governing
equation for these boundary conditions is implemented in the
developed finite element code considering the horizontal and vertical
earthquake components. The weighted residual standard Galerkin
finite element technique with 8-node elements is used to discretize
the equation that produces a symmetric matrix equation for the damreservoir
system. A new boundary condition is proposed for
truncating surface of unbounded fluid domain to show the energy
dissipation in the reservoir, through radiation in the infinite upstream
direction. The Sommerfeld-s and perfect damping boundary
conditions are also implemented for a truncated boundary to compare
with the proposed far end boundary. The results are compared with
an analytical solution to demonstrate the accuracy of the proposed
formulation and other truncated boundary conditions in modeling the
hydrodynamic response of an infinite reservoir.
Abstract: In this paper a new Joint Adaptive Block Matching
Search (JABMS) algorithm is proposed to generate motion vector
and search a best match macro block by classifying the motion vector
movement based on prediction error. Diamond Search (DS)
algorithm generates high estimation accuracy when motion vector is
small and Adaptive Rood Pattern Search (ARPS) algorithm can
handle large motion vector but is not very accurate. The proposed
JABMS algorithm which is capable of considering both small and
large motions gives improved estimation accuracy and the
computational cost is reduced by 15.2 times compared with
Exhaustive Search (ES) algorithm and is 1.3 times less compared
with Diamond search algorithm.
Abstract: In this study three commercial semiconductor devices
were characterized in the laboratory for computed tomography
dosimetry: one photodiode and two phototransistors. It was evaluated
four responses to the irradiation: dose linearity, energy dependence,
angular dependence and loss of sensitivity after X ray exposure. The
results showed that the three devices have proportional response with
the air kerma; the energy dependence displayed for each device
suggests that some calibration factors would be applied for each one;
the angular dependence showed a similar pattern among the three
electronic components. In respect to the fourth parameter analyzed,
one phototransistor has the highest sensitivity however it also showed
the greatest loss of sensitivity with the accumulated dose. The
photodiode was the device with the smaller sensitivity to radiation,
on the other hand, the loss of sensitivity after irradiation is negligible.
Since high accuracy is a desired feature for a dosimeter, the
photodiode can be the most suitable of the three devices for
dosimetry in tomography. The phototransistors can also be used for
CT dosimetry, however it would be necessary a correction factor due
to loss of sensitivity with accumulated dose.
Abstract: For investigations of electromagnetic field
distributions in biological structures by Finite Element Method
(FEM), a method for automatic 3D model building of human
anatomical objects is developed. Models are made by meshed
structures and specific electromagnetic material properties for each
tissue type. Mesh is built according to specific FEM criteria for
achieving good solution accuracy. Several FEM models of
anatomical objects are built. Formulation using magnetic vector
potential and scalar electric potential (A-V, A) is used for modeling
of electromagnetic fields in human tissue objects. The developed
models are suitable for investigations of electromagnetic field
distributions in human tissues exposed in external fields during
magnetic stimulation, defibrillation, impedance tomography etc.
Abstract: The purpose of this paper is to present a Dynamic
Time Warping technique which reduces significantly the data
processing time and memory size of multi-dimensional time series
sampled by the biometric smart pen device BiSP. The acquisition
device is a novel ballpoint pen equipped with a diversity of sensors
for monitoring the kinematics and dynamics of handwriting
movement. The DTW algorithm has been applied for time series
analysis of five different sensor channels providing pressure,
acceleration and tilt data of the pen generated during handwriting on
a paper pad. But the standard DTW has processing time and memory
space problems which limit its practical use for online handwriting
recognition. To face with this problem the DTW has been applied to
the sum of the five sensor signals after an adequate down-sampling
of the data. Preliminary results have shown that processing time and
memory size could significantly be reduced without deterioration of
performance in single character and word recognition. Further
excellent accuracy in recognition was achieved which is mainly due
to the reduced dynamic time warping RDTW technique and a novel
pen device BiSP.
Abstract: Now-a-days, numbers of simulation software are
being used all over the world to solve Computational Fluid
Dynamics (CFD) related problems. In this present study, a
commercial CFD simulation software namely STAR-CCM+ is
applied to analyze the airflow characteristics inside a 2.5" hard
disk drive. Each step of the software is described adequately to
obtain the output and the data are verified with the theories to
justify the robustness of the simulation outcome. This study
gives an insight about the accuracy level of the CFD
simulation software to compute CFD related problems
although it largely depends upon the computer speed. Also
this study will open avenues for further research.
Abstract: Medical image registration is the key technology in image guided radiation therapy (IGRT) systems. On the basis of the previous work on our IGRT prototype with a biorthogonal x-ray imaging system, we described a method focused on the 2D/2D rigid-body registration using multiresolution pyramid based mutual information in this paper. Three key steps were involved in the method ： firstly, four 2D images were obtained including two x-ray projection images and two digital reconstructed radiographies（DRRs ） as the input for the registration ； Secondly, each pair of the corresponding x-ray image and DRR image were matched using multiresolution pyramid based mutual information under the ITK registration framework ； Thirdly, we got the final couch offset through a coordinate transformation by calculating the translations acquired from the two pairs of the images. A simulation example of a parotid gland tumor case and a clinical example of an anthropomorphic head phantom were employed in the verification tests. In addition, the influence of different CT slice thickness were tested. The simulation results showed that the positioning errors were 0.068±0.070, 0.072±0.098, 0.154±0.176mm along three axes which were lateral, longitudinal and vertical. The clinical test indicated that the positioning errors of the planned isocenter were 0.066, 0.07, 2.06mm on average with a CT slice thickness of 2.5mm. It can be concluded that our method with its verified accuracy and robustness can be effectively used in IGRT systems for patient setup.
Abstract: This paper presents an optimized algorithm for robot localization which increases the correctness and accuracy of the estimating position of mobile robot to more than 150% of the past methods [1] in the uncertain and noisy environment. In this method the odometry and vision sensors are combined by an adapted well-known discrete kalman filter [2]. This technique also decreased the computation process of the algorithm by DKF simple implementation. The experimental trial of the algorithm is performed on the robocup middle size soccer robot; the system can be used in more general environments.
Abstract: In this work, we present a reliable framework to solve boundary value problems with particular significance in solid mechanics. These problems are used as mathematical models in deformation of beams. The algorithm rests mainly on a relatively new technique, the Variational Iteration Method. Some examples are given to confirm the efficiency and the accuracy of the method.
Abstract: Software project effort estimation is frequently seen
as complex and expensive for individual software engineers.
Software production is in a crisis. It suffers from excessive costs.
Software production is often out of control. It has been suggested that
software production is out of control because we do not measure.
You cannot control what you cannot measure. During last decade, a
number of researches on cost estimation have been conducted. The
metric-set selection has a vital role in software cost estimation
studies; its importance has been ignored especially in neural network
based studies. In this study we have explored the reasons of those
disappointing results and implemented different neural network
models using augmented new metrics. The results obtained are
compared with previous studies using traditional metrics. To be able
to make comparisons, two types of data have been used. The first
part of the data is taken from the Constructive Cost Model
(COCOMO'81) which is commonly used in previous studies and the
second part is collected according to new metrics in a leading
international company in Turkey. The accuracy of the selected
metrics and the data samples are verified using statistical techniques.
The model presented here is based on Multi-Layer Perceptron
(MLP). Another difficulty associated with the cost estimation studies
is the fact that the data collection requires time and care. To make a
more thorough use of the samples collected, k-fold, cross validation
method is also implemented. It is concluded that, as long as an
accurate and quantifiable set of metrics are defined and measured
correctly, neural networks can be applied in software cost estimation
studies with success
Abstract: In this paper we proposed comparison of four content based objective metrics with results of subjective tests from 80 video sequences. We also include two objective metrics VQM and SSIM to our comparison to serve as “reference” objective metrics because their pros and cons have already been published. Each of the video sequence was preprocessed by the region recognition algorithm and then the particular objective video quality metric were calculated i.e. mutual information, angular distance, moment of angle and normalized cross-correlation measure. The Pearson coefficient was calculated to express metrics relationship to accuracy of the model and the Spearman rank order correlation coefficient to represent the metrics relationship to monotonicity. The results show that model with the mutual information as objective metric provides best result and it is suitable for evaluating quality of video sequences.
Abstract: This paper presents the development of a Bayesian
belief network classifier for prediction of graft status and survival
period in renal transplantation using the patient profile information
prior to the transplantation. The objective was to explore feasibility
of developing a decision making tool for identifying the most suitable
recipient among the candidate pool members. The dataset was
compiled from the University of Toledo Medical Center Hospital
patients as reported to the United Network Organ Sharing, and had
1228 patient records for the period covering 1987 through 2009. The
Bayes net classifiers were developed using the Weka machine
learning software workbench. Two separate classifiers were induced
from the data set, one to predict the status of the graft as either failed
or living, and a second classifier to predict the graft survival period.
The classifier for graft status prediction performed very well with a
prediction accuracy of 97.8% and true positive values of 0.967 and
0.988 for the living and failed classes, respectively. The second
classifier to predict the graft survival period yielded a prediction
accuracy of 68.2% and a true positive rate of 0.85 for the class
representing those instances with kidneys failing during the first year
following transplantation. Simulation results indicated that it is
feasible to develop a successful Bayesian belief network classifier for
prediction of graft status, but not the graft survival period, using the
information in UNOS database.
Abstract: The goal of the study reported in the paper was to
determine whether Ambient Occlusion Shading (AOS) has a significant effect on users' perception of American Sign Language (ASL) finger spelling animations. Seventy-one (71) subjects
participated in the study; all subjects were fluent in ASL. The participants were asked to watch forty (40) sign language animation
clips representing twenty (20) finger spelled words. Twenty (20) clips did not show ambient occlusion, whereas the other twenty (20) were
rendered using ambient occlusion shading. After viewing each animation, subjects were asked to type the word being finger-spelled and rate its legibility. Findings show that the presence of AOS had a significant effect on the subjects perception of the signed words.
Subjects were able to recognize the animated words rendered with AOS with higher level of accuracy, and the legibility ratings of the animations showing AOS were consistently higher across subjects.
Abstract: In this paper, a system level behavioural model for RF
power amplifier, which exhibits memory effects, and based on multibranch
system is proposed. When higher order terms are included,
the memory polynomial model (MPM) exhibits numerical
instabilities. A set of memory orthogonal polynomial model
(OMPM) is introduced to alleviate the numerical instability problem
associated to MPM model. A data scaling and centring algorithm was
applied to improve the power amplifier modeling accuracy.
Simulation results prove that the numerical instability can be greatly
reduced, as well as the model precision improved with nonlinear
model.