Abstract: Ants are fascinating creatures that demonstrate the
ability to find food and bring it back to their nest. Their ability as a
colony, to find paths to food sources has inspired the development of
algorithms known as Ant Colony Systems (ACS). The principle of
cooperation forms the backbone of such algorithms, commonly used
to find solutions to problems such as the Traveling Salesman
Problem (TSP). Ants communicate to each other through chemical
substances called pheromones. Modeling individual ants- ability to
manipulate this substance can help an ACS find the best solution.
This paper introduces a Dynamic Ant Colony System with threelevel
updates (DACS3) that enhance an existing ACS. Experiments
were conducted to observe single ant behavior in a colony of
Malaysian House Red Ants. Such behavior was incorporated into the
DACS3 algorithm. We benchmark the performance of DACS3 versus
DACS on TSP instances ranging from 14 to 100 cities. The result
shows that the DACS3 algorithm can achieve shorter distance in
most cases and also performs considerably faster than DACS.
Abstract: This paper objects to extend Jon Kleinberg-s research. He introduced the structure of small-world in a grid and shows with a greedy algorithm using only local information able to find route between source and target in delivery time O(log2n). His fundamental model for distributed system uses a two-dimensional grid with longrange random links added between any two node u and v with a probability proportional to distance d(u,v)-2. We propose with an additional information of the long link nearby, we can find the shorter path. We apply the ant colony system as a messenger distributed their pheromone, the long-link details, in surrounding area. The subsequence forwarding decision has more option to move to, select among local neighbors or send to node has long link closer to its target. Our experiment results sustain our approach, the average routing time by Color Pheromone faster than greedy method.
Abstract: Biological data has several characteristics that strongly differentiate it from typical business data. It is much more complex, usually large in size, and continuously changes. Until recently business data has been the main target for discovering trends, patterns or future expectations. However, with the recent rise in biotechnology, the powerful technology that was used for analyzing business data is now being applied to biological data. With the advanced technology at hand, the main trend in biological research is rapidly changing from structural DNA analysis to understanding cellular functions of the DNA sequences. DNA chips are now being used to perform experiments and DNA analysis processes are being used by researchers. Clustering is one of the important processes used for grouping together similar entities. There are many clustering algorithms such as hierarchical clustering, self-organizing maps, K-means clustering and so on. In this paper, we propose a clustering algorithm that imitates the ecosystem taking into account the features of biological data. We implemented the system using an Ant-Colony clustering algorithm. The system decides the number of clusters automatically. The system processes the input biological data, runs the Ant-Colony algorithm, draws the Topic Map, assigns clusters to the genes and displays the output. We tested the algorithm with a test data of 100 to1000 genes and 24 samples and show promising results for applying this algorithm to clustering DNA chip data.
Abstract: Ants are fascinating creatures that demonstrate the
ability to find food and bring it back to their nest. Their ability as a
colony, to find paths to food sources has inspired the development of
algorithms known as Ant Colony Systems (ACS). The principle of
cooperation forms the backbone of such algorithms, commonly used
to find solutions to problems such as the Traveling Salesman
Problem (TSP). Ants communicate to each other through chemical
substances called pheromones. Modeling individual ants- ability to
manipulate this substance can help an ACS find the best solution.
This paper introduces a Dynamic Ant Colony System with threelevel
updates (DACS3) that enhance an existing ACS. Experiments
were conducted to observe single ant behavior in a colony of
Malaysian House Red Ants. Such behavior was incorporated into the
DACS3 algorithm. We benchmark the performance of DACS3 versus
DACS on TSP instances ranging from 14 to 100 cities. The result
shows that the DACS3 algorithm can achieve shorter distance in
most cases and also performs considerably faster than DACS.
Abstract: Bio-chips are used for experiments on genes and
contain various information such as genes, samples and so on. The
two-dimensional bio-chips, in which one axis represent genes and the
other represent samples, are widely being used these days. Instead of
experimenting with real genes which cost lots of money and much
time to get the results, bio-chips are being used for biological
experiments. And extracting data from the bio-chips with high
accuracy and finding out the patterns or useful information from such
data is very important. Bio-chip analysis systems extract data from
various kinds of bio-chips and mine the data in order to get useful
information. One of the commonly used methods to mine the data is
classification. The algorithm that is used to classify the data can be
various depending on the data types or number characteristics and so
on. Considering that bio-chip data is extremely large, an algorithm that
imitates the ecosystem such as the ant algorithm is suitable to use as an
algorithm for classification. This paper focuses on finding the
classification rules from the bio-chip data using the Ant Colony
algorithm which imitates the ecosystem. The developed system takes
in consideration the accuracy of the discovered rules when it applies it
to the bio-chip data in order to predict the classes.