Abstract: Modeling and simulation of biochemical reactions is of great interest in the context of system biology. The central dogma of this re-emerging area states that it is system dynamics and organizing principles of complex biological phenomena that give rise to functioning and function of cells. Cell functions, such as growth, division, differentiation and apoptosis are temporal processes, that can be understood if they are treated as dynamic systems. System biology focuses on an understanding of functional activity from a system-wide perspective and, consequently, it is defined by two hey questions: (i) how do the components within a cell interact, so as to bring about its structure and functioning? (ii) How do cells interact, so as to develop and maintain higher levels of organization and functions? In recent years, wet-lab biologists embraced mathematical modeling and simulation as two essential means toward answering the above questions. The credo of dynamics system theory is that the behavior of a biological system is given by the temporal evolution of its state. Our understanding of the time behavior of a biological system can be measured by the extent to which a simulation mimics the real behavior of that system. Deviations of a simulation indicate either limitations or errors in our knowledge. The aim of this paper is to summarize and review the main conceptual frameworks in which models of biochemical networks can be developed. In particular, we review the stochastic molecular modelling approaches, by reporting the principal conceptualizations suggested by A. A. Markov, P. Langevin, A. Fokker, M. Planck, D. T. Gillespie, N. G. van Kampfen, and recently by D. Wilkinson, O. Wolkenhauer, P. S. Jöberg and by the author.
Abstract: Classifying biomedical literature is a difficult and
challenging task, especially when a large number of biomedical
articles should be organized into a hierarchical structure. In this paper,
we present an approach for classifying a collection of biomedical text
abstracts downloaded from Medline database with the help of
ontology alignment. To accomplish our goal, we construct two types
of hierarchies, the OHSUMED disease hierarchy and the Medline
abstract disease hierarchies from the OHSUMED dataset and the
Medline abstracts, respectively. Then, we enrich the OHSUMED
disease hierarchy before adapting it to ontology alignment process for
finding probable concepts or categories. Subsequently, we compute
the cosine similarity between the vector in probable concepts (in the
“enriched" OHSUMED disease hierarchy) and the vector in Medline
abstract disease hierarchies. Finally, we assign category to the new
Medline abstracts based on the similarity score. The results obtained
from the experiments show the performance of our proposed approach
for hierarchical classification is slightly better than the performance of
the multi-class flat classification.
Abstract: Currently, there are many local area industrial networks
that can give guaranteed bandwidth to synchronous traffic, particularly
providing CBR channels (Constant Bit Rate), which allow
improved bandwidth management. Some of such networks operate
over Ethernet, delivering channels with enough capacity, specially
with compressors, to integrate multimedia traffic in industrial monitoring
and image processing applications with many sources. In
these industrial environments where a low latency is an essential
requirement, JPEG is an adequate compressing technique but it
generates VBR traffic (Variable Bit Rate). Transmitting VBR traffic
in CBR channels is inefficient and current solutions to this problem
significantly increase the latency or further degrade the quality. In
this paper an R(q) model is used which allows on-line calculation of
the JPEG quantification factor. We obtained increased quality, a lower
requirement for the CBR channel with reduced number of discarded
frames along with better use of the channel bandwidth.
Abstract: One major difficulty that faces developers of
concurrent and distributed software is analysis for concurrency based
faults like deadlocks. Petri nets are used extensively in the
verification of correctness of concurrent programs. ECATNets [2] are
a category of algebraic Petri nets based on a sound combination of
algebraic abstract types and high-level Petri nets. ECATNets have
'sound' and 'complete' semantics because of their integration in
rewriting logic [12] and its programming language Maude [13].
Rewriting logic is considered as one of very powerful logics in terms
of description, verification and programming of concurrent systems.
We proposed in [4] a method for translating Ada-95 tasking
programs to ECATNets formalism (Ada-ECATNet). In this paper,
we show that ECATNets formalism provides a more compact
translation for Ada programs compared to the other approaches based
on simple Petri nets or Colored Petri nets (CPNs). Such translation
doesn-t reduce only the size of program, but reduces also the number
of program states. We show also, how this compact Ada-ECATNet
may be reduced again by applying reduction rules on it. This double
reduction of Ada-ECATNet permits a considerable minimization of
the memory space and run time of corresponding Maude program.
Abstract: Wavelength multiplexing (WDM) technology along
with optical amplifiers is used for optical communication systems in
S-band, C-band and L-band. To improve the overall system
performance Hybrid amplifiers consisting of cascaded TDFA and
EDFA with different gain bandwidths are preferred for long haul
wavelength multiplexed optical communication systems. This paper
deals with statistical analysis of different configuration of hybrid
amplifier i.e. analysis of TDFA-EDFA configuration and EDFA –
TDFA configuration. In this paper One-Way ANOVA method is used
for statistical analysis.
Abstract: In this paper, Speed Sensorless Indirect Field Oriented Control (IFOC) of a Permanent Magnet Synchronous machine (PMSM) is studied. The closed loop scheme of the drive system utilizes fuzzy speed and current controllers. Due to the well known drawbacks of the speed sensor, an algorithm is proposed in this paper to eliminate it. In fact, based on the model of the PMSM, the stator currents and rotor speed are estimated simultaneously using adaptive Luenberger observer for currents and MRAS (Model Reference Adaptive System) observer for rotor speed. To overcome the sensivity of this algorithm against parameter variation, adaptive for on line stator resistance tuning is proposed. The validity of the proposed method is verified by an extensive simulation work.
Abstract: A numerical investigation of surface heat transfer
characteristics of turbulent air flows in different parallel plate
grooved channels is performed using CFD code. The results are
obtained for Reynolds number ranging from 10,000 to 30,000 and for
arc-shaped and rectangular grooved channels. The influence of
different geometric parameters of dimples as well as the number of
them and the geometric and thermophysical properties of channel
walls are studied. It is found that there exists an optimum value for
depth of dimples in which the largest wall heat flux can be achieved.
Also, the results show a critical value for the ratio of wall thermal
conductivity to the one of fluid in which the dependence of wall heat
flux to this ratio almost vanishes. In most cases examined, heat
transfer enhancement is larger for arc-shaped grooved channels than
rectangular ones.
Abstract: In this work we investigated the behavior of methane
hydrates dispersed in crude oils from different fields at temperatures
below 0°C. In case of crude oil emulsion the size of water droplets is
in the range of 50e100"m. The size of hydrate particles formed from
droplets is the same. The self-preservation is not expected in this
field. However, the self-preservation of hydrates with the size of
particles 24±18"m (electron microscopy data) in suspensions is
observed. Similar results were obtained for four different kinds of
crude oil and model system such as asphaltenes, resins and wax in ndecane.
This result can allow developing effective methods to prevent
the formation and elimination of gas-hydrate plugs in pipelines under
low temperature conditions (e. g. in Eastern Siberia). There is a
prospective to use experiment results for working out the technology
of associated petroleum gas recovery.
Abstract: The research was conducted with three replications as
“Randomized Block Design” in Konya-Turkey ecological conditions.
In the study, 16 of promising safflower lines (A8, E1, F4, F6, G16,
H14, I1), and 1 cultivar (Dinçer) were evaluated in 2008-09 growing
season. Some of the yield components such as plant height (cm), first
branch height (cm), number of branches per plant, 1000 seed weight
(g), seed yield (kg ha-1), oil content (%), oil yield (kg ha-1) were
determined. Winter sowing showed higher values than spring sowing.
The highest values were taken from Dinçer for plant height (86.7
cm), E1 (37.5 cm) for first branch height, F6 for number of branch
(11.6 per plant), I1 for number of head (24.9 per plant), A8 for 1000
seed weight (51.75 g), Dinçer for seed yield (2927.1 kg ha-1), oil
content (28.79 %) and also for oil yield (87.44 kg ha-1) respectively.
Abstract: In this paper, a new method of controlling position of AC Servomotor using Field Programmable Gate Array (FPGA). FPGA controller is used to generate direction and the number of pulses required to rotate for a given angle. Pulses are sent as a square wave, the number of pulses determines the angle of rotation and frequency of square wave determines the speed of rotation. The proposed control scheme has been realized using XILINX FPGA SPARTAN XC3S400 and tested using MUMA012PIS model Alternating Current (AC) servomotor. Experimental results show that the position of the AC Servo motor can be controlled effectively. KeywordsAlternating Current (AC), Field Programmable Gate Array (FPGA), Liquid Crystal Display (LCD).
Abstract: Assembly line balancing is a very important issue in
mass production systems due to production cost. Although many
studies have been done on this topic, but because assembly line
balancing problems are so complex they are categorized as NP-hard
problems and researchers strongly recommend using heuristic
methods. This paper presents a new heuristic approach called the
critical task method (CTM) for solving U-shape assembly line
balancing problems. The performance of the proposed heuristic
method is tested by solving a number of test problems and comparing
them with 12 other heuristics available in the literature to confirm the
superior performance of the proposed heuristic. Furthermore, to
prove the efficiency of the proposed CTM, the objectives are
increased to minimize the number of workstation (or equivalently
maximize line efficiency), and minimizing the smoothness index.
Finally, it is proven that the proposed heuristic is more efficient than
the others to solve the U-shape assembly line balancing problem.
Abstract: An adaptive Fuzzy Inference Perceptual model has
been proposed for watermarking of digital images. The model
depends on the human visual characteristics of image sub-regions in
the frequency multi-resolution wavelet domain. In the proposed
model, a multi-variable fuzzy based architecture has been designed to
produce a perceptual membership degree for both candidate
embedding sub-regions and strength watermark embedding factor.
Different sizes of benchmark images with different sizes of
watermarks have been applied on the model. Several experimental
attacks have been applied such as JPEG compression, noises and
rotation, to ensure the robustness of the scheme. In addition, the
model has been compared with different watermarking schemes. The
proposed model showed its robustness to attacks and at the same time
achieved a high level of imperceptibility.
Abstract: Nowadays companies strive to survive in a
competitive global environment. To speed up product
development/modifications, it is suggested to adopt a collaborative
product development approach. However, despite the advantages of
new IT improvements still many CAx systems work separately and
locally. Collaborative design and manufacture requires a product
information model that supports related CAx product data models. To
solve this problem many solutions are proposed, which the most
successful one is adopting the STEP standard as a product data model
to develop a collaborative CAx platform. However, the improvement
of the STEP-s Application Protocols (APs) over the time, huge
number of STEP AP-s and cc-s, the high costs of implementation,
costly process for conversion of older CAx software files to the STEP
neutral file format; and lack of STEP knowledge, that usually slows
down the implementation of the STEP standard in collaborative data
exchange, management and integration should be considered. In this
paper the requirements for a successful collaborative CAx system is
discussed. The STEP standard capability for product data integration
and its shortcomings as well as the dominant platforms for supporting
CAx collaboration management and product data integration are
reviewed. Finally a platform named LAYMOD to fulfil the
requirements of CAx collaborative environment and integrating the
product data is proposed. The platform is a layered platform to enable
global collaboration among different CAx software
packages/developers. It also adopts the STEP modular architecture
and the XML data structures to enable collaboration between CAx
software packages as well as overcoming the STEP standard
limitations. The architecture and procedures of LAYMOD platform
to manage collaboration and avoid contradicts in product data
integration are introduced.
Abstract: Meat and meat products for human consumption are one of main sources of protein, amino acids, fatty acids, vitamins, and minerals. Popular variety of meat product is meatballs, which can be enriched with valuable product – Jerusalem artichoke powder, made from dried and grinded Jerusalem artichoke tubers, it is raw material with low-calorie, low fat, rich in dietary fibres, minerals, and vitamins. The results of this study indicate that that people could accept the new product - meatballs with Jerusalem artichoke powder and Jerusalem artichoke powder is suitable for meatballs preparation, in result them is possible to improve meatballs sensory and physical properties.
Abstract: In Orthogonal Frequency Division Multiplexing (OFDM) systems, the peak to average power ratio (PAR) is much high. The clipping signal scheme is a useful method to reduce PAR. Clipping the OFDM signal, however, increases the overall noise level by introducing clipping noise. It is necessary to recover the figure of the original signal at receiver in order to reduce the clipping noise. Considering the continuity of the signal and the figure of the peak, we obtain a certain conic function curve to replace the clipped signal module within the clipping time. The results of simulation show that the proposed scheme can reduce the systems? BER (bit-error rate) 10 times when signal-to-interference-and noise-ratio (SINR) equals to 12dB. And the BER performance of the proposed scheme is superior to that of kim's scheme, too.
Abstract: The applications on numbers are across-the-board that there is much scope for study. The chic of writing numbers is diverse and comes in a variety of form, size and fonts. Identification of Indian languages scripts is challenging problems. In Optical Character Recognition [OCR], machine printed or handwritten characters/numerals are recognized. There are plentiful approaches that deal with problem of detection of numerals/character depending on the sort of feature extracted and different way of extracting them. This paper proposes a recognition scheme for handwritten Hindi (devnagiri) numerals; most admired one in Indian subcontinent our work focused on a technique in feature extraction i.e. Local-based approach, a method using 16-segment display concept, which is extracted from halftoned images & Binary images of isolated numerals. These feature vectors are fed to neural classifier model that has been trained to recognize a Hindi numeral. The archetype of system has been tested on varieties of image of numerals. Experimentation result shows that recognition rate of halftoned images is 98 % compared to binary images (95%).
Abstract: An experiment was conducted in October 2008 due the ability replacement plant associate biofertilizers by chemical fertilizers and the qualifying rate of chemical N fertilizers at the moment of using this biofertilizers and the interaction of this biofertilizer on each other. This field experiment has been done in Persepolis (Throne of Jamshid) and arrange by using factorial with the basis of randomized complete block design, in three replication Azespirilium SP bacteria has been admixed with consistence 108 cfu/g and inoculated with seeds of wheat, The streptomyces SP has been used in amount of 550 gr/ha and concatenated on clay and for the qualifying range of chemical fertilizer 4 level of N chemical fertilizer from the source of urea (N0=0, N1=60, N2=120, N3=180) has been used in this experiment. The results indicated there were Significant differences between levels of Nitrogen fertilizer in the entire characteristic which has been measured in this experiment. The admixed Azespirilium SP showed significant differences between their levels in the characteristics such as No. of fertile ear, No. of grain per ear, grain yield, grain protein percentage, leaf area index and the agronomic fertilizer use efficiency. Due the interaction streptomyses with Azespirilium SP bacteria this actinomycet didn-t show any statistically significant differences between it levels.
Abstract: Field Association (FA) terms are a limited set of discriminating terms that give us the knowledge to identify document fields which are effective in document classification, similar file retrieval and passage retrieval. But the problem lies in the lack of an effective method to extract automatically relevant Arabic FA Terms to build a comprehensive dictionary. Moreover, all previous studies are based on FA terms in English and Japanese, and the extension of FA terms to other language such Arabic could be definitely strengthen further researches. This paper presents a new method to extract, Arabic FA Terms from domain-specific corpora using part-of-speech (POS) pattern rules and corpora comparison. Experimental evaluation is carried out for 14 different fields using 251 MB of domain-specific corpora obtained from Arabic Wikipedia dumps and Alhyah news selected average of 2,825 FA Terms (single and compound) per field. From the experimental results, recall and precision are 84% and 79% respectively. Therefore, this method selects higher number of relevant Arabic FA Terms at high precision and recall.
Abstract: The purpose of study was to design and construction
the semi-automatic sliced ginger machine for reduce production times
in sheet and slice ginger procedure furthermore, reduced amount of
labor of slides and cutting method. Take consider into clean and safety of workers and consumers. The principle of machines, used 1
horsepower motor, rotation speed of sliced blade 967 rpm, the diameter of sliced dish 310 mm, consists of 2 blades for sheet cutting
ginger and the power from motor which transfer to rotate the sliced blade roller, rotation speed 440 rpm. The slice cutter roller was sliced
ginger from sheet ginger to line ginger. The conveyer could
adjustment level of motors, used to the beginning area that sheet
ginger was transference to the roller for sheet and sliced cutting in next process. The cover of sliced cutting had channel for 1 tuber of
ginger. The semi-automatic sliced ginger machine could produced sheet ginger 81.8 kg/h (6.2 times of labor) and line ginger 17.9 kg/h
(2.5 times of labor) compare with, labor work could produced sheet
ginger 13.2 kg/h and line ginger 7.1 kg/h, and when timekeeper, the
total times of semi auto machine 30.86 kg/h and labor 4.6 kg/h, there
for the semi auto machine was 6.7 times of labor. The semiautomatic
sliced ginger machine convenient, easy for use and
maintain, in addition to reduce fatigue of body and seriousness from
works; must be used high skill, and protection accident in slicing
procedure. Beside, machine could used with other vegetables for
example potato, carrot .etc
Abstract: The response of King Abdulla Canal (KAC) water to the upgrade of As Samra Wastewater Treatment Plant which discharges its effluent to the Zarqa River is investigated. Time series quality data that extends between October 2005 and December 2009 obtained by a state of the art telemetric monitoring system were analyzed for COD, EC, TP and TN at two monitoring stations located upstream and downstream of the confluence of the Zarqa River with KAC. The samples- means and the t-test showed that there has been significant improvement in the quality of the KAC water for COD, and TP. However, the improvement in the TN was found statistically insignificant, whereas the EC of the KAC was unaffected by the upgrade. Comparing the selected parameters with the standards and guidelines for using treated wastewater in irrigation showed that the KAC water has improved towards meeting the required standards and guidelines for treated wastewater reuse in irrigation.