Abstract: Surface sediment samples were collected from the
Canon River mouth, Taiwan and analyzed for polycyclic aromatic
hydrocarbons (PAHs). Total PAHs concentrations varied from 337 to
1,252 ng/g dry weight, with a mean concentration of 827 ng/g dry
weight. The spatial distribution of PAHs reveals that the PAHs
concentration is relatively high in the river mouth region, and
gradually diminishes toward the harbor region. Diagnostic ratios
showed that the possible source of PAHs in the Canon River mouth
could be petroleum combustion. The toxic equivalent concentrations
(TEQcarc) of PAHs varied from 47 to 112 ng TEQ/g dry weight. Higher
total TEQcarc values were found in the river mouth region. As
compared with the US Sediment Quality Guidelines (SQGs), the
observed levels of PAHs at Canon River mouth were lower than the
effects range low (ERL), and would probably not exert adverse
biological effects.
Abstract: This paper presents a method for the detection of OD in the retina which takes advantage of the powerful preprocessing techniques such as the contrast enhancement, Gabor wavelet transform for vessel segmentation, mathematical morphology and Earth Mover-s distance (EMD) as the matching process. The OD detection algorithm is based on matching the expected directional pattern of the retinal blood vessels. Vessel segmentation method produces segmentations by classifying each image pixel as vessel or nonvessel, based on the pixel-s feature vector. Feature vectors are composed of the pixel-s intensity and 2D Gabor wavelet transform responses taken at multiple scales. A simple matched filter is proposed to roughly match the direction of the vessels at the OD vicinity using the EMD. The minimum distance provides an estimate of the OD center coordinates. The method-s performance is evaluated on publicly available DRIVE and STARE databases. On the DRIVE database the OD center was detected correctly in all of the 40 images (100%) and on the STARE database the OD was detected correctly in 76 out of the 81 images, even in rather difficult pathological situations.
Abstract: Segmenting the lungs in medical images is a
challenging and important task for many applications. In particular,
automatic segmentation of lung cavities from multiple magnetic
resonance (MR) images is very useful for oncological applications
such as radiotherapy treatment planning. However, distinguishing of
the lung areas is not trivial due to largely changing lung shapes, low
contrast and poorly defined boundaries. In this paper, we address
lung segmentation problem from pulmonary magnetic resonance
images and propose an automated method based on a robust regionaided
geometric snake with a modified diffused region force into the
standard geometric model definition. The extra region force gives the
snake a global complementary view of the lung boundary
information within the image which along with the local gradient
flow, helps detect fuzzy boundaries. The proposed method has been
successful in segmenting the lungs in every slice of 30 magnetic
resonance images with 80 consecutive slices in each image. We
present results by comparing our automatic method to manually
segmented lung cavities provided by an expert radiologist and with
those of previous works, showing encouraging results and high
robustness of our approach.
Abstract: Biological sequences from different species are called or-thologs if they evolved from a sequence of a common ancestor species and they have the same biological function. Approximations of Kolmogorov complexity or entropy of biological sequences are already well known to be useful in extracting similarity information between such sequences -in the interest, for example, of ortholog detection. As is well known, the exact Kolmogorov complexity is not algorithmically computable. In prac-tice one can approximate it by computable compression methods. How-ever, such compression methods do not provide a good approximation to Kolmogorov complexity for short sequences. Herein is suggested a new ap-proach to overcome the problem that compression approximations may notwork well on short sequences. This approach is inspired by new, conditional computations of Kolmogorov entropy. A main contribution of the empir-ical work described shows the new set of entropy-based machine learning attributes provides good separation between positive (ortholog) and nega-tive (non-ortholog) data - better than with good, previously known alter-natives (which do not employ some means to handle short sequences well).Also empirically compared are the new entropy based attribute set and a number of other, more standard similarity attributes sets commonly used in genomic analysis. The various similarity attributes are evaluated by cross validation, through boosted decision tree induction C5.0, and by Receiver Operating Characteristic (ROC) analysis. The results point to the conclu-sion: the new, entropy based attribute set by itself is not the one giving the best prediction; however, it is the best attribute set for use in improving the other, standard attribute sets when conjoined with them.
Abstract: Alzheimer is known as the loss of mental functions
such as thinking, memory, and reasoning that is severe enough to
interfere with a person's daily functioning. The appearance of
Alzheimer Disease symptoms (AD) are resulted based on which part
of the brain has a variety of infection or damage. In this case, the
MRI is the best biomedical instrumentation can be ever used to
discover the AD existence. Therefore, this paper proposed a fusion
method to distinguish between the normal and (AD) MRIs. In this
combined method around 27 MRIs collected from Jordanian
Hospitals are analyzed based on the use of Low pass -morphological
filters to get the extracted statistical outputs through intensity
histogram to be employed by the descriptive box plot. Also, the
artificial neural network (ANN) is applied to test the performance of
this approach. Finally, the obtained result of t-test with confidence
accuracy (95%) has compared with classification accuracy of ANN
(100 %). The robust of the developed method can be considered
effectively to diagnose and determine the type of AD image.
Abstract: Biologically human brain processes information in both unimodal and multimodal approaches. In fact, information is progressively abstracted and seamlessly fused. Subsequently, the fusion of multimodal inputs allows a holistic understanding of a problem. The proliferation of technology has exponentially produced various sources of data, which could be likened to being the state of multimodality in human brain. Therefore, this is an inspiration to develop a methodology for exploring multimodal data and further identifying multi-view patterns. Specifically, we propose a brain inspired conceptual model that allows exploration and identification of patterns at different levels of granularity, different types of hierarchies and different types of modalities. A structurally adaptive neural network is deployed to implement the proposed model. Furthermore, the acquisition of multi-view patterns with the proposed model is demonstrated and discussed with some experimental results.
Abstract: Today Environmental Impact Assessment (EIA) is known as one of the most important tools for decision makers in the construction of civil and industrial projects towards sustainable development. In the past, projects were evaluated based on cost and benefit analysis regardless of the physical and biological environmental effects and its socio-economical impacts. According to the Department of Environment (DOE) of Iran's regulations, the construction of hydroelectric dams is an activity that requires an EIA report. In this paper the environmental impact assessment of the Gotvand hydro-electrical dam has been evaluated in the three environment elements, biological, Physical-chemical and cultural units. This dam is one of the largest dams in Iran with a volume of 4500 MCM and is going to be the last dam on the Karoon River in the south of Iran. In this paper the ICOLD (International Commission on Large Dams) technique was employed for the environmental impact assessment of the dam. The research includes all socio economical and environmental effects of the dam during the construction and operation of the hydro electric dam and Environmental management, monitoring and mitigation of negative impacts were analyzed. In this project the results led to using some techniques to protect the destructive impacts on biological aspects beside the effective long time period impacts on the biological aspects. The impacts on physical aspects are temporary and negative commonly that could be restored and rehabilitated in natural process in the long time in operation period.
Abstract: Magneto-rheological (MR) fluid damper is a semiactive
control device that has recently received more attention by the
vibration control community. But inherent hysteretic and highly
nonlinear dynamics of MR fluid damper is one of the challenging
aspects to employ its unique characteristics. The combination of
artificial neural network (ANN) and fuzzy logic system (FLS) have
been used to imitate more precisely the behavior of this device.
However, the derivative-based nature of adaptive networks causes
some deficiencies. Therefore, in this paper, a novel approach that
employ genetic algorithm, as a free-derivative algorithm, to enhance
the capability of fuzzy systems, is proposed. The proposed method
used to model MR damper. The results will be compared with
adaptive neuro-fuzzy inference system (ANFIS) model, which is one
of the well-known approaches in soft computing framework, and two
best parametric models of MR damper. Data are generated based on
benchmark program by applying a number of famous earthquake
records.
Abstract: The study of morphometric and histologic evolutions
of the Bursa of Fabricus during 27 weeks of post-hashing age,
realized on 88 subjects of broiler chicken they permitted to collect
information about the morpho-histological aspect according to their
post-hashing age; showed the size and the weight of the Bursa of
Fabricius which reach their maximum between the 10th and the 11th
week of age and the physiologic involution phenomena. These
variations are in close relationship to the sexual maturity. These
results can be used in the diagnosis of viral disease such as the
Gumboro disease, Marek disease.
Abstract: The acid rain causes change in pH level of soil it is
directly influence on root and leaf growth. Yield of the crop was
reduced if acidity of soil is more. Acid rain seeps into the earth and
poisons plants and trees by dissolving toxic substances in the soil,
such as aluminum, which get absorbed by the roots. In present
investigation, effect of acid rain on crop Vigna radiata was studied.
The effect of acid rain on change in soil fertility was detected in
which pH of control sample was 6.5 and pH of 1% H2SO4 and 1%
HNO3 were 3.5. Nitrogen nitrate in soil was high in 1% HNO3 treated
soil & Control sample. Ammonium nitrogen in soil was low in 1%
HNO3 & H2SO4 treated soil. Ammonium nitrogen was medium in
control and other samples. The effect of acid rain on seed
germination on 3rd day of germination control sample growth was
6.1cm with plumule 0.001% HNO3 & 0.001% H2SO4 was 5.5cm
with plumule and 8cm with plumule. On 10th day fungal growth was
observed in 1% and 0.1% H2SO4 concentrations when all plants were
dead. The effect of acid rain on crop productivity was investigated on
3rd day roots were developed in plants. On 12th day Vigna radiata
showed more growth in 0.1% HNO3 and 0.1% H2SO4 treated plants
as compare to control plants. On 20th day development of
discoloration of plant pigments were observed on acid treated plants
leaves. On 34th day Vigna radiata showed flower in 0.1% HNO3,
0.01% HNO3 and 0.01% H2SO4treated plants and no flowers were
observed on control plants. On 42th day 0.1% HNO3, 0.01% HNO
and 0.01% H2SO4 treated Vigna radiata variety and control plants
were showed seeds on plants. In Vigna radiate variety 0.1%, 0.01%
HNO3, 0.01% H2SO4treated plants were dead on 46th day and fungal
growth was observed. The toxicological study was carried out on
Vigna radiata plants exposed to 1% HNO3 cells were damaged more
than 1% H2SO4. Leaf sections exposed to 0.001% HNO3 & H2SO4
showed less damaged of cells and pigmentation observed in entire
slide when compare with control plant.
Abstract: The understanding of the system level of biological behavior and phenomenon variously needs some elements such as gene sequence, protein structure, gene functions and metabolic pathways. Challenging problems are representing, learning and reasoning about these biochemical reactions, gene and protein structure, genotype and relation between the phenotype, and expression system on those interactions. The goal of our work is to understand the behaviors of the interactions networks and to model their evolution in time and in space. We propose in this study an ontological meta-model for the knowledge representation of the genetic regulatory networks. Ontology in artificial intelligence means the fundamental categories and relations that provide a framework for knowledge models. Domain ontology's are now commonly used to enable heterogeneous information resources, such as knowledge-based systems, to communicate with each other. The interest of our model is to represent the spatial, temporal and spatio-temporal knowledge. We validated our propositions in the genetic regulatory network of the Aarbidosis thaliana flower
Abstract: The antioxidant compounds are needed for the food, beverages, and pharmaceuticals industry. For this purpose, an appropriate method is required to measure the antioxidant properties in various types of samples. Spectrophotometric method usually used has some weaknesses, including the high price, long sample preparation time, and less sensitivity. Among the alternative methods developed to overcome these weaknesses is antioxidant biosensor based on superoxide dismutase (SOD) enzyme. Therefore, this study was carried out to measure the SOD activity originating from Deinococcus radiodurans and to determine its kinetics properties. Carbon paste electrode modified with ferrocene and immobilized SOD exhibited anode and cathode current peak at potential of +400 and +300mv respectively, in both pure SOD and SOD of D. radiodurans. This indicated that the current generated was from superoxide catalytic dismutation reaction by SOD. Optimum conditions for SOD activity was at pH 9 and temperature of 27.50C for D. radiodurans SOD, and pH 11 and temperature of 200C for pure SOD. Dismutation reaction kinetics of superoxide catalyzed by SOD followed the Lineweaver-Burk kinetics with D. radiodurans SOD KMapp value was smaller than pure SOD. The result showed that D. radiodurans SOD had higher enzyme-substrate affinity and specificity than pure SOD. It concluded that D. radiodurans SOD had a great potential as biological recognition component for antioxidant biosensor.
Abstract: In Data mining, Fuzzy clustering algorithms have
demonstrated advantage over crisp clustering algorithms in dealing
with the challenges posed by large collections of vague and uncertain
natural data. This paper reviews concept of fuzzy logic and fuzzy
clustering. The classical fuzzy c-means algorithm is presented and its
limitations are highlighted. Based on the study of the fuzzy c-means
algorithm and its extensions, we propose a modification to the cmeans
algorithm to overcome the limitations of it in calculating the
new cluster centers and in finding the membership values with
natural data. The efficiency of the new modified method is
demonstrated on real data collected for Bhutan-s Gross National
Happiness (GNH) program.
Abstract: This paper draws a methodological framework adopted within an internal Telecomitalia project aimed to identify, on a user centred base, the potential interest towards a technological scenario aimed to extend on a personal bubble the typical communication and media fruition home environment. The problem is that involving user in the early stage of the development of such disruptive technology scenario asking users opinions on something that users actually do not manage even in a rough manner could lead to wrong or distorted results. For that reason we chose an approach that indirectly aim to understand users hidden needs in order to obtain a meaningful picture of the possible interest for a technological proposition non yet easily understandable.
Abstract: Trust management is one of the drawbacks in Peer-to-Peer (P2P) system. Lack of centralized control makes it difficult to control the behavior of the peers. Reputation system is one approach to provide trust assessment in P2P system. In this paper, we use fuzzy logic to model trust in a P2P environment. Our trust model combines first-hand (direct experience) and second-hand (reputation)information to allow peers to represent and reason with uncertainty regarding other peers' trustworthiness. Fuzzy logic can help in handling the imprecise nature and uncertainty of trust. Linguistic labels are used to enable peers assign a trust level intuitively. Our fuzzy trust model is flexible such that inference rules are used to weight first-hand and second-hand accordingly.
Abstract: A cross sectional study design and standard
microbiological procedures were used to determine the prevalence
and antimicrobial susceptibility patterns of Escherichia coli,
Salmonella enterica serovar typhimurium and Vibrio cholerae O1
isolated from water and two fish species Rastrineobola argentea and
Oreochromis niloticus collected from fish landing beaches and
markets in the Lake Victoria Basin of western Kenya. Out of 162
samples analyzed, 133 (82.1%) were contaminated, with S.
typhimurium as the most prevalent (49.6%), followed by E. coli
(46.6%), and lastly V. cholerae (2.8%). All the bacteria isolates were
sensitive to ciprofloxacin. E. coli isolates were resistant to ampicillin,
tetracycline, cotrimoxazole, chloramphenical and gentamicin while
S. typhimurium isolates exhibited resistance to ampicillin,
tetracycline, and cotrimoxazole. The V. cholerae O1 isolates were
resistant to tetracycline and ampicillin. The high prevalence of drug
resistant enteric bacteria in water and fish from the study region
needs public health intervention from the local government.
Abstract: The given work is devoted to the description of
Information Technologies NAS of Azerbaijan created and
successfully maintained in Institute. On the basis of the decision of
board of the Supreme Certifying commission at the President of the
Azerbaijan Republic and Presidium of National Academy of
Sciences of the Azerbaijan Republic, the organization of training
courses on Computer Sciences for all post-graduate students and
dissertators of the republic, taking of examinations of candidate
minima, it was on-line entrusted to Institute of Information
Technologies of the National Academy of Sciences of Azerbaijan.
Therefore, teaching the computer sciences to post-graduate
students and dissertators a scientific - methodological manual on
effective application of new information technologies for research
works by post-graduate students and dissertators and taking of
candidate minima is carried out in the Educational Center.
Information and communication technologies offer new
opportunities and prospects of their application for teaching and
training. The new level of literacy demands creation of essentially
new technology of obtaining of scientific knowledge. Methods of
training and development, social and professional requirements,
globalization of the communicative economic and political projects
connected with construction of a new society, depends on a level of
application of information and communication technologies in the
educational process. Computer technologies develop ideas of
programmed training, open completely new, not investigated
technological ways of training connected to unique opportunities of
modern computers and telecommunications. Computer technologies
of training are processes of preparation and transfer of the
information to the trainee by means of computer. Scientific and
technical progress as well as global spread of the technologies
created in the most developed countries of the world is the main
proof of the leading role of education in XXI century. Information
society needs individuals having modern knowledge. In practice, all
technologies, using special technical information means (computer,
audio, video) are called information technologies of education.
Abstract: The studies concerned an effect of six variants of ion
exchange substrate (nutrient carriers with a different potential impact
on pH of soil solution) on vegetation of orchard grass during two
different periods (42 and 84 days). In the pot experiment plants were
grown on sand (model of degraded soil) and six mixtures of sand and
2% (v/v) additions of particular variants of ion exchange substrate
(with pH ranged from 5.5 to 8.0). The study results showed that the
addition of the substrate at pH=6.5 caused the highest increase in
plant yield after shorter vegetation period whereas the addition of the
substrate at pH=5.5 increased dry stem and root biomass of orchard
grass after longer vegetation period. Thus, the ion exchange substrate
at pH=6.5 can be recommended for restoration of exhausted soils
when shorter vegetation period is planned; the ion exchange substrate
at pH=5.5 can be used for the same purpose when longer periods of
vegetative growth are considered.
Abstract: Generalized Center String (GCS) problem are
generalized from Common Approximate Substring problem
and Common substring problems. GCS are known to be
NP-hard allowing the problems lies in the explosion of
potential candidates. Finding longest center string without
concerning the sequence that may not contain any motifs is
not known in advance in any particular biological gene
process. GCS solved by frequent pattern-mining techniques
and known to be fixed parameter tractable based on the
fixed input sequence length and symbol set size. Efficient
method known as Bpriori algorithms can solve GCS with
reasonable time/space complexities. Bpriori 2 and Bpriori
3-2 algorithm are been proposed of any length and any
positions of all their instances in input sequences. In this
paper, we reduced the time/space complexity of Bpriori
algorithm by Constrained Based Frequent Pattern mining
(CBFP) technique which integrates the idea of Constraint
Based Mining and FP-tree mining. CBFP mining technique
solves the GCS problem works for all center string of any
length, but also for the positions of all their mutated copies
of input sequence. CBFP mining technique construct TRIE
like with FP tree to represent the mutated copies of center
string of any length, along with constraints to restraint
growth of the consensus tree. The complexity analysis for
Constrained Based FP mining technique and Bpriori
algorithm is done based on the worst case and average case
approach. Algorithm's correctness compared with the
Bpriori algorithm using artificial data is shown.
Abstract: the elastic scattering of protons, deuterons and 3He on 6Li at different incident energies have been analyzed in the framework of the optical model using ECIS88 as well as SPI GENOA codes. The potential parameters were extracted in the phenomenological treatment of measured by us angular distributions and literature data. A good agreement between theoretical and experimental differential cross sections was obtained in whole angular range. Parameters for real part of potential have been also calculated microscopically with singleand double-folding model for the p and d, 3He scattering, respectively, using DFPOT code. For best agreement with experiment the normalization factor N for the potential depth is obtained in the range of 0.7-0.9.